View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18332_low_7 (Length: 433)

Name: NF18332_low_7
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18332_low_7
NF18332_low_7
[»] chr4 (21 HSPs)
chr4 (19-421)||(2391189-2391591)
chr4 (19-235)||(2381561-2381777)
chr4 (19-234)||(2380297-2380512)
chr4 (43-421)||(2382695-2383069)
chr4 (268-421)||(2380558-2380713)
chr4 (310-422)||(2381814-2381928)
chr4 (86-218)||(2533992-2534124)
chr4 (85-148)||(2621399-2621462)
chr4 (95-218)||(2547223-2547346)
chr4 (27-148)||(2525504-2525625)
chr4 (109-218)||(2367923-2368032)
chr4 (108-148)||(12124594-12124634)
chr4 (17-148)||(2467294-2467425)
chr4 (103-148)||(2361217-2361262)
chr4 (103-140)||(2486064-2486101)
chr4 (23-55)||(2376407-2376439)
chr4 (108-149)||(2373488-2373529)
chr4 (179-220)||(12124522-12124563)
chr4 (85-140)||(2393829-2393885)
chr4 (178-218)||(2625588-2625628)
chr4 (108-140)||(12126658-12126690)
[»] chr5 (1 HSPs)
chr5 (96-153)||(41900496-41900553)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 2391189 - 2391591
Alignment:
Q  19 cttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaa 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2391189 cttcttacccaaatctccactttccctttagtcctcagatcgctcattctttccaacttctacaaaatccctaaagatgggttccgagctttgtccaaaa 2391288  T
Q  119 agatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaact 218  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2391289 agatgaaaaatttgacctctcttacttgttccgaatttttttggatcaacaagaaggatatcttcttcattgttgattgcttccctttactcgaagaact 2391388  T
Q  219 tgttctcaaggaaacagactgcactgattacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccga 318  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2391389 tgttctcaaggaaacagactgcagtgattacacttctgctaggaagttcgattttgtgctagatgaagataataattttttggcacttcccaaactccga 2391488  T
Q  319 aagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391489 aagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgat 2391588  T
Q  419 gat 421  Q
    |||    
T  2391589 gat 2391591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 2381561 - 2381777
Alignment:
Q  19 cttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaa 118  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||| | ||||| || |  ||||| |||||||||||||||||||||||||||||||    
T  2381561 cttcttacccaaatctccgctttccctttagacctcaaatcgctcattttctccaagttttttaaaatccctaaagatgggttccgagctttgtccaaaa 2381660  T
Q  119 agatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaact 218  Q
    ||||||||||||||||||||||||||||||  |||       ||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||    
T  2381661 agatgaaaaatttgacctctcttacttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaact 2381760  T
Q  219 tgttctcaaggaaacag 235  Q
     ||||||||| ||||||    
T  2381761 cgttctcaagaaaacag 2381777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 2380297 - 2380512
Alignment:
Q  19 cttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaa 118  Q
    |||||||| ||||||||| |||| |||||||| |||| |||||||||||| |||||| ||| |||||| || ||| |||| || ||| ||||||||||||    
T  2380297 cttcttacacaaatctccgctttacctttagatctcaaatcgctcattctctccaacctcttcaaaatcccgaaaaatggattgcgacctttgtccaaaa 2380396  T
Q  119 agatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaact 218  Q
    |||||||||||||||| ||| | |  |||||| ||       ||||||| ||||||||||| | |||||||| |||||||||||||| |||||||| |||    
T  2380397 agatgaaaaatttgacttctttcatgtgtttcaaaattacttggatcaataagaaggatatttacttcattgctgattgcttcccttcacttgaagtact 2380496  T
Q  219 tgttctcaaggaaaca 234  Q
     |||||||||||||||    
T  2380497 cgttctcaaggaaaca 2380512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 421
Target Start/End: Original strand, 2382695 - 2383069
Alignment:
Q  43 cctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctctta 142  Q
    |||||||| |||| ||| |||||||| |||||| ||| |||||| | || | |||| || |||||||||||||||||||||||||| ||||| ||| | |    
T  2382695 cctttagatctcaaatcactcattctctccaacctcttcaaaatccatataaatggattgcgagctttgtccaaaaagatgaaaaaattgacttctttca 2382794  T
Q  143 cttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaacagactgcac 242  Q
     ||||||| ||         || |   ||||||||||||  |||||||   |||||||||||||||| || | ||| |||||||||||||||   |||      
T  2382795 tttgtttcaaa---------attacgtagaaggatatctatttcattgccaattgcttccctttactcgatgtactcgttctcaaggaaacatgatgcgt 2382885  T
Q  243 tgat---tacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttat 339  Q
     | |   ||| ||||| || |||| ||  |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||    
T  2382886 aggtcagtacccttctacttggaacttttattttgtgctagatgatgataatcaatttttggcacttcccaaactccgaaagattaatttgtatggtaat 2382985  T
Q  340 gacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacctagatggtgatgat 421  Q
      ||||||||||||| ||||| ||||||| | ||  |||| | |||||||  ||||||||||||||||| |||||||| |||||    
T  2382986 tccatcgatagccaaattattaattatcttcgcaaaaaccgtggacctttcacagaggagaagaataacttagatggtaatgat 2383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 2380558 - 2380713
Alignment:
Q  268 gattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatc 367  Q
    ||||||| ||||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||||| |   ||||||||||||| ||||| ||||||    
T  2380558 gattttgagctagatgatgataataaatttttagcacttccaaaactccgaaagattagtttgtatggtaactccatcgatagccaaattattaattatc 2380657  T
Q  368 tccacagcaaccctcgacctttca--gaggagaagaataacctagatggtgatgat 421  Q
    ||| ||  |||| | |||||||||  ||||||||||||||| |||||||| |||||    
T  2380658 tccgcaaaaaccgtggacctttcacggaggagaagaataacttagatggtaatgat 2380713  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 422
Target Start/End: Original strand, 2381814 - 2381928
Alignment:
Q  310 aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacc 407  Q
    |||||||||||||||||||||  ||||  | |||| ||| ||||||||||| ||||||||| || ||||| | |||||||  ||||| |||||||||||     
T  2381814 aaactccgaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataact 2381913  T
Q  408 tagatggtgatgatg 422  Q
    |||||||| ||||||    
T  2381914 tagatggtaatgatg 2381928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 2534124 - 2533992
Alignment:
Q  86 ttcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttctt 185  Q
    ||||| || ||| |||||||||||||||||| |||||||||||||| || ||||| |||||||   ||         ||||||||||| ||| |||||||    
T  2534124 ttcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttctt 2534025  T
Q  186 cattgttgattgcttccctttacttgaagaact 218  Q
     |||| |||||| ||||||||||||||||||||    
T  2534024 gattgctgattgtttccctttacttgaagaact 2533992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 2621399 - 2621462
Alignment:
Q  85 attcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 148  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||    
T  2621399 attcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgtt 2621462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 2547346 - 2547223
Alignment:
Q  95 atgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttga 194  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||| | ||||| | ||         |||| |||||| ||| | |||||||||| |||    
T  2547346 atgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttcattgctga 2547247  T
Q  195 ttgcttccctttacttgaagaact 218  Q
    ||| ||||||||||||||||||||    
T  2547246 ttgtttccctttacttgaagaact 2547223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 2525625 - 2525504
Alignment:
Q  27 ccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaa 126  Q
    ||||||||||||||||||||||||||||| |||||||| ||| | | ||  |  |||  ||||| || ||| ||| || | ||||||||| || ||||||    
T  2525625 ccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaaa 2525526  T
Q  127 aatttgacctctcttacttgtt 148  Q
    |||||||| ||||| |||||||    
T  2525525 aatttgacatctctcacttgtt 2525504  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 2367923 - 2368032
Alignment:
Q  109 ttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttac 208  Q
    |||||||||| ||||||||| ||||||||||||||||||| || |       | ||  ||||||  ||| |||||||||||| |||||| ||||||||||    
T  2367923 ttgtccaaaaggatgaaaaacttgacctctcttacttgttccggaatgattagtattcacaagagtgatctcttcttcattgctgattgtttccctttac 2368022  T
Q  209 ttgaagaact 218  Q
    | ||||||||    
T  2368023 tcgaagaact 2368032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  108 tttgtccaaaaagatgaaaaatttgacctctcttacttgtt 148  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 2467425 - 2467294
Alignment:
Q  17 cacttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaa 116  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||| |||| ||| | | ||  |   |   |||||  ||||||||| |||||||| |||||    
T  2467425 cacttcttaccaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaa 2467326  T
Q  117 aaagatgaaaaatttgacctctcttacttgtt 148  Q
    | |||||||||||||||| || || |||||||    
T  2467325 agagatgaaaaatttgacatcactcacttgtt 2467294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  103 cgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 148  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 2486101 - 2486064
Alignment:
Q  103 cgagctttgtccaaaaagatgaaaaatttgacctctct 140  Q
    |||||||||||||||||||||||||||||||| |||||    
T  2486101 cgagctttgtccaaaaagatgaaaaatttgacatctct 2486064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 2376407 - 2376439
Alignment:
Q  23 ttacccaaatctccactttccctttagacctca 55  Q
    |||||||||||||||||||||||||||||||||    
T  2376407 ttacccaaatctccactttccctttagacctca 2376439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 2373488 - 2373529
Alignment:
Q  108 tttgtccaaaaagatgaaaaatttgacctctcttacttgttt 149  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  2373488 tttgtccgaaaagatgaaatatttgacctctctcacttgttt 2373529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 12124563 - 12124522
Alignment:
Q  179 tcttcttcattgttgattgcttccctttacttgaagaacttg 220  Q
    |||||||||||| |||||| ||||||||||| ||||||||||    
T  12124563 tcttcttcattgctgattgtttccctttactagaagaacttg 12124522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 2393829 - 2393885
Alignment:
Q  85 attcctaaagatgggttccgagctttgtccaaaaagatg-aaaaatttgacctctct 140  Q
    |||| |||| ||||||| |||||||||||| |||||||| ||||||||||| |||||    
T  2393829 attcataaaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctct 2393885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 2625588 - 2625628
Alignment:
Q  178 atcttcttcattgttgattgcttccctttacttgaagaact 218  Q
    |||||||| ||||||||||| ||||||||||| ||||||||    
T  2625588 atcttctttattgttgattgtttccctttactcgaagaact 2625628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 12126690 - 12126658
Alignment:
Q  108 tttgtccaaaaagatgaaaaatttgacctctct 140  Q
    |||||||||| ||||||||||||||||||||||    
T  12126690 tttgtccaaacagatgaaaaatttgacctctct 12126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 41900496 - 41900553
Alignment:
Q  96 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaa 153  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| ||||||| ||||    
T  41900496 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaa 41900553  T

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