View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18333_high_2 (Length: 338)
Name: NF18333_high_2
Description: NF18333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18333_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 28 - 321
Target Start/End: Complemental strand, 3606050 - 3605760
Alignment:
| Q |
28 |
tatacttcacagaattagtatggttgaattcaaaagaaagactagatatgtattccaattttggaatatggctaaagcatacacaaaagcagcatatttc |
127 |
Q |
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| T |
3606050 |
tatacttcacagaattagtatggttgaattcaaaagaaagactagatatgtattccaattttggaatatggctaaagcatacacaaaagcagcatatttc |
3605951 |
T |
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| Q |
128 |
tgaggtgcgtgcggtgataccatggctaggtagcaacttggtttagattgccaccaccctatggaacaattttcttcaactaatttatcggttatttttg |
227 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3605950 |
tgaggtgggtgcggtgataccatggctaagtagcaacttggtttagattgccaccaccctatggaacaattttcttcaactaa--tatcggttatttttg |
3605853 |
T |
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| Q |
228 |
tcaaacattctttgggatatgtatggaaggaggatttatcagttatctttgtcaaacattctttcacaaaagatttggtttttcttgtgttttg |
321 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
3605852 |
tcaaacattctttaggatatgtatggaaggaggatttatcagttatctttgtcaaacattctttcac-aaagatttggcttttcttgtgttttg |
3605760 |
T |
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