View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18333_high_3 (Length: 302)
Name: NF18333_high_3
Description: NF18333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18333_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 34 - 286
Target Start/End: Complemental strand, 39751852 - 39751600
Alignment:
| Q |
34 |
aacttgagtttttggattaacatgtttatatgctatttatagtaaaaacgaagaaaaagtagtagcatacagggttatgaaatgcttcccaaacagcttt |
133 |
Q |
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| T |
39751852 |
aacttgagtttttggattaacatgtttatatgctatttatagtaaaaacgaagaaaaagtagtagcatacagggttatgaaatgcttcccaaacagcttt |
39751753 |
T |
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| Q |
134 |
caagacagagattatgtctgttttggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaat |
233 |
Q |
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| T |
39751752 |
caagacagagattatgtctgttttggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaat |
39751653 |
T |
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| Q |
234 |
ccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctgttatt |
286 |
Q |
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| T |
39751652 |
ccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctgttatt |
39751600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 33270319 - 33270399
Alignment:
| Q |
201 |
agaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctg |
281 |
Q |
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| T |
33270319 |
agaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg |
33270399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 25707106 - 25707238
Alignment:
| Q |
150 |
tctgttttggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcat |
249 |
Q |
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| T |
25707106 |
tctgttttggtggtgaagtgagtaatccccaaaagacccttgagctgctgaagaccaataatgattgctgctcctgccatgaatccaactagtgcagcat |
25707205 |
T |
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| Q |
250 |
gtgacagaaaatccacaaggaaccccaacctgt |
282 |
Q |
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|||| |||||||||||||| || |||||||||| |
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| T |
25707206 |
gtgaaagaaaatccacaagaaaacccaacctgt |
25707238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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