View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18333_low_1 (Length: 493)

Name: NF18333_low_1
Description: NF18333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18333_low_1
NF18333_low_1
[»] chr4 (10 HSPs)
chr4 (71-493)||(52315248-52315670)
chr4 (347-465)||(3155478-3155594)
chr4 (414-492)||(25885799-25885877)
chr4 (409-464)||(4798639-4798694)
chr4 (414-465)||(7601699-7601750)
chr4 (415-493)||(17884009-17884087)
chr4 (424-491)||(24929443-24929510)
chr4 (419-465)||(25904289-25904335)
chr4 (414-464)||(26520309-26520359)
chr4 (414-493)||(40174505-40174582)
[»] chr5 (15 HSPs)
chr5 (347-464)||(9202828-9202943)
chr5 (414-465)||(37112337-37112388)
chr5 (411-465)||(4014503-4014557)
chr5 (345-464)||(12425444-12425561)
chr5 (414-464)||(42583089-42583139)
chr5 (419-454)||(3735581-3735616)
chr5 (367-464)||(39105360-39105454)
chr5 (421-464)||(42569060-42569103)
chr5 (419-465)||(3932764-3932810)
chr5 (437-490)||(34736302-34736355)
chr5 (418-493)||(2568601-2568677)
chr5 (409-453)||(7096218-7096262)
chr5 (420-464)||(10363696-10363740)
chr5 (409-485)||(19177414-19177490)
chr5 (409-453)||(29115304-29115348)
[»] chr6 (11 HSPs)
chr6 (347-464)||(264246-264361)
chr6 (414-464)||(29274309-29274359)
chr6 (409-493)||(4006649-4006733)
chr6 (414-493)||(9093607-9093686)
chr6 (414-465)||(430455-430506)
chr6 (414-485)||(6310283-6310354)
chr6 (419-465)||(8147647-8147693)
chr6 (414-464)||(20671945-20671995)
chr6 (409-493)||(25099977-25100062)
chr6 (355-384)||(30536711-30536740)
chr6 (409-449)||(2454948-2454988)
[»] chr1 (15 HSPs)
chr1 (410-493)||(37842406-37842489)
chr1 (407-464)||(48748663-48748719)
chr1 (414-491)||(1432455-1432532)
chr1 (412-493)||(34952153-34952234)
chr1 (416-491)||(38578469-38578544)
chr1 (414-493)||(49888707-49888786)
chr1 (414-464)||(4256122-4256172)
chr1 (415-465)||(9572187-9572237)
chr1 (419-465)||(14331734-14331780)
chr1 (416-490)||(49557083-49557157)
chr1 (414-459)||(3887717-3887762)
chr1 (415-464)||(8852801-8852850)
chr1 (414-451)||(27146341-27146378)
chr1 (417-485)||(6074417-6074485)
chr1 (414-493)||(7244709-7244787)
[»] chr8 (10 HSPs)
chr8 (414-493)||(42597341-42597420)
chr8 (414-465)||(40598932-40598983)
chr8 (414-493)||(4558738-4558817)
chr8 (409-464)||(10114425-10114479)
chr8 (409-464)||(13652150-13652205)
chr8 (409-464)||(13710793-13710848)
chr8 (409-451)||(10727132-10727174)
chr8 (415-485)||(16210945-16211015)
chr8 (436-493)||(34770854-34770911)
chr8 (414-454)||(26215436-26215476)
[»] chr3 (11 HSPs)
chr3 (416-490)||(44061077-44061151)
chr3 (419-485)||(30956685-30956751)
chr3 (419-485)||(30972497-30972563)
chr3 (414-464)||(2128331-2128381)
chr3 (414-485)||(40122812-40122882)
chr3 (418-464)||(46778307-46778353)
chr3 (415-485)||(48397587-48397657)
chr3 (419-464)||(15304427-15304472)
chr3 (415-464)||(42809242-42809291)
chr3 (409-453)||(1395606-1395650)
chr3 (418-466)||(42808923-42808971)
[»] chr2 (10 HSPs)
chr2 (415-493)||(18066069-18066147)
chr2 (416-459)||(26143726-26143769)
chr2 (418-464)||(9195358-9195404)
chr2 (409-465)||(4026752-4026808)
chr2 (414-466)||(5133712-5133764)
chr2 (409-493)||(10143107-10143191)
chr2 (409-453)||(12215742-12215786)
chr2 (413-453)||(15173465-15173505)
chr2 (417-465)||(42420373-42420421)
chr2 (414-454)||(43141498-43141538)
[»] chr7 (7 HSPs)
chr7 (409-493)||(27548198-27548282)
chr7 (419-485)||(119855-119921)
chr7 (419-465)||(48469989-48470035)
chr7 (416-465)||(43152981-43153030)
chr7 (347-404)||(39393712-39393770)
chr7 (422-466)||(37064542-37064586)
chr7 (414-490)||(49060480-49060556)
[»] scaffold0024 (1 HSPs)
scaffold0024 (414-464)||(21358-21408)
[»] scaffold0590 (1 HSPs)
scaffold0590 (409-453)||(1165-1209)
[»] scaffold0275 (1 HSPs)
scaffold0275 (409-453)||(2766-2810)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 71 - 493
Target Start/End: Complemental strand, 52315670 - 52315248
Alignment:
Q  71 atagcagctgaaattctgacccttcaatagcggaatcaagatgattagtacaagattttctaattctaaatggatctgtnnnnnnntacggtgtcatcat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  52315670 atagcagctgaaattctgacccttcaatagcggaatcaagatgattagtacaagattttctaattctaaatggatctgtaaaaaaatacggtgtcatcat 52315571  T
Q  171 agttgggatgtatatttgcattcaaatttatttgtnnnnnnnncttagaggaaaataagaaacgttagaagcaactgcacaaaaacaaatatcatgctcc 270  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  52315570 agttgggatgtatatttgcattcaaatttatttgtaaaaaaaacttagaggaaaataagaaacgatagaagcaactgcccaaaaacaaatatcatgctcc 52315471  T
Q  271 aatattttaatcttcctctataataatgcgtaaaaactatatgaatgtggataggtaagtatcctagtttagaattaggccctatttggataacagctta 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52315470 aatattttaatcttcctctataataatgcgtaaaaactatatgaatgtggatagataagtatcctagtttagaattaggccctatttggataacagctta 52315371  T
Q  371 tttgcagcttataagacaagtgttgatcatgatatgatgtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaa 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52315370 tttgcagcttataagacaagtgttgatcatgatatgatgtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaa 52315271  T
Q  471 agctataagttgtttccataagc 493  Q
    || ||||||||||||||||||||    
T  52315270 agttataagttgtttccataagc 52315248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 347 - 465
Target Start/End: Original strand, 3155478 - 3155594
Alignment:
Q  347 aggccctatttggataa-cagcttatttgcagcttataagacaagtgttgatcatgatatg-atgtgcctatgtataagctatttctacagcaaaagatg 444  Q
    ||||||||||||||||| || ||||| |||||||||||  ||||| | | ||||||||| | ||||    |||||||||||||||||| ||||||||||     
T  3155478 aggccctatttggataaacaacttatctgcagcttatagtacaagcgcttatcatgataagcatgt----atgtataagctatttctatagcaaaagata 3155573  T
Q  445 aaataaagtttaattgttttt 465  Q
    |||||||||| ||||||||||    
T  3155574 aaataaagttaaattgttttt 3155594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 25885799 - 25885877
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataag 492  Q
    ||||||| |||| |||||| |||||||||| |||||||||| |||||||||     |||||||||||||||| ||||||    
T  25885799 tatgtattagctctttctatagcaaaagataaaataaagttaaattgttttcgtgtaagctataagttgttttcataag 25885877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Complemental strand, 4798694 - 4798639
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||| ||||||||||||||||||| | |||||||| ||||||||| ||| ||||||    
T  4798694 gtgcttatgtataagctatttctatatcaaaagataaaataaagtctaaatgtttt 4798639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 465
Target Start/End: Original strand, 7601699 - 7601750
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||||||| ||| |||||| ||| |||||||||| ||||||||||    
T  7601699 tatgtataagctattcctatagcaaaggataaaataaagttaaattgttttt 7601750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 493
Target Start/End: Original strand, 17884009 - 17884087
Alignment:
Q  415 atgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagta-aagctataagttgtttccataagc 493  Q
    |||| ||||||||||||| | |||||||| |||||||||| |||||||||| ||| ||| ||| |||||||| |||||||    
T  17884009 atgtgtaagctatttctataacaaaagataaaataaagttaaattgttttt-gtataagttatcagttgttttcataagc 17884087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 491
Target Start/End: Original strand, 24929443 - 24929510
Alignment:
Q  424 ctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataa 491  Q
    ||||||||| | |||||||| ||||||||| ||| |||||| |  ||||||||||||||||| |||||    
T  24929443 ctatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataa 24929510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 465
Target Start/End: Complemental strand, 25904335 - 25904289
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||| ||||||||||||| |||||||||| ||||| ||||    
T  25904335 ataagctatttttacagcaaaagataaaataaagttaaattgatttt 25904289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 26520359 - 26520309
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    ||||||||| || |||||| | ||||||||||||||||||| |||||||||    
T  26520359 tatgtataaactgtttctataacaaaagatgaaataaagttaaattgtttt 26520309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 40174505 - 40174582
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    |||||||||||||||| ||  |||||| || || ||||||| ||||||||| |  ||||||||||| ||||| |||||||    
T  40174505 tatgtataagctatttata--gcaaaaaataaattaaagttaaattgttttcataaaagctataagctgttttcataagc 40174582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 347 - 464
Target Start/End: Complemental strand, 9202943 - 9202828
Alignment:
Q  347 aggccctatttggataa-cagcttatttgcagcttataagacaagtgttgatcatgatatgatgtgcctatgtataagctatttctacagcaaaagatga 445  Q
    ||||||| ||||||||| || |||||||||||||||||  ||||||||| ||||||||| |   ||| ||| ||||||||||||||  |||||||||| |    
T  9202943 aggccctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataag---tgcttatatataagctatttctgtagcaaaagataa 9202847  T
Q  446 aataaagtttaattgtttt 464  Q
    ||||||||| |||||||||    
T  9202846 aataaagttaaattgtttt 9202828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 465
Target Start/End: Complemental strand, 37112388 - 37112337
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  37112388 tatgtataagctatttctacagcaaaagataaaacaaagttaaattgttttt 37112337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 411 - 465
Target Start/End: Complemental strand, 4014557 - 4014503
Alignment:
Q  411 gcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    |||||||||||||||||||||| |||||||||| ||||||||||  |||||||||    
T  4014557 gcctatgtataagctatttctatagcaaaagataaaataaagttagattgttttt 4014503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 464
Target Start/End: Original strand, 12425444 - 12425561
Alignment:
Q  345 ttaggccctatttg-gataacagcttatttgcagcttataagacaagtgttgatcatgatatgatgtgcctatgtataagctatttctacagcaaaagat 443  Q
    ||||||||| |||| | ||||| |||||||||||||||||  ||||||||| ||||||||   |   || ||||||||| |||||| || || |||||||    
T  12425444 ttaggccctgtttgtgttaacatcttatttgcagcttatagtacaagtgtttatcatgat---aaacgcttatgtataaactatttatatagtaaaagat 12425540  T
Q  444 gaaataaagtttaattgtttt 464  Q
     |||||||||| |||||||||    
T  12425541 aaaataaagttaaattgtttt 12425561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 42583089 - 42583139
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||||||||| |||||||| | ||||||||||||||||||| |||||||||    
T  42583089 tatgtataaggtatttctataacaaaagatgaaataaagttaaattgtttt 42583139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 454
Target Start/End: Complemental strand, 3735616 - 3735581
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtt 454  Q
    |||||||||||||| |||||||||||||||||||||    
T  3735616 ataagctatttctatagcaaaagatgaaataaagtt 3735581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 464
Target Start/End: Original strand, 39105360 - 39105454
Alignment:
Q  367 cttatttgcagcttataagacaagtgttgatcatgatatgatgtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||||||||||||||||  | ||||| | ||||||||| |    || ||||||||||||||||||| ||| ||| ||||||| ||||| |||||||||    
T  39105360 cttatttgcagcttatagcataagtgcttatcatgataagc---gcttatgtataagctatttctatagctaaatatgaaatgaagttaaattgtttt 39105454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 464
Target Start/End: Complemental strand, 42569103 - 42569060
Alignment:
Q  421 aagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||    
T  42569103 aagctatttctatagcaaaagataaaataaagtctaattgtttt 42569060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 465
Target Start/End: Complemental strand, 3932810 - 3932764
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||| || |||||||||| |||| ||||||||||||||||    
T  3932810 ataagctatttttatagcaaaagataaaatgaagtttaattgttttt 3932764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 490
Target Start/End: Original strand, 34736302 - 34736355
Alignment:
Q  437 aaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccata 490  Q
    |||||||||||||||||| |||||||||| |  |||||||||| ||||| ||||    
T  34736302 aaaagatgaaataaagttaaattgttttttgataagctataagctgttttcata 34736355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 2568601 - 2568677
Alignment:
Q  418 tataagctatttctacagcaaaagatgaaataaagtttaattgtttttagta-aagctataagttgtttccataagc 493  Q
    ||||| ||||||||| | ||| | || ||| |||||| |||||||||| ||| |||||||||||||||| |||||||    
T  2568601 tataaactatttctataacaagatataaaacaaagttaaattgtttttcgtataagctataagttgttttcataagc 2568677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 7096262 - 7096218
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagt 453  Q
    |||| ||||||||||||||||||| | |||||||| |||||||||    
T  7096262 gtgcttatgtataagctatttctataacaaaagataaaataaagt 7096218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 10363696 - 10363740
Alignment:
Q  420 taagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    ||||||||||||| | |||||||| |||||||||| |||||||||    
T  10363696 taagctatttctataacaaaagataaaataaagttaaattgtttt 10363740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 485
Target Start/End: Original strand, 19177414 - 19177490
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgttt 485  Q
    |||| ||||||||| ||||||||||| || ||||| |||| |||| ||| |||||| |   ||||||||||||||||    
T  19177414 gtgcttatgtataaactatttctacaacagaagataaaattaagtctaactgttttcatataagctataagttgttt 19177490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 29115348 - 29115304
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagt 453  Q
    |||| ||||||||||||||||||||| |||||| | |||||||||    
T  29115348 gtgcttatgtataagctatttctacaacaaaaggtaaaataaagt 29115304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 464
Target Start/End: Original strand, 264246 - 264361
Alignment:
Q  347 aggccctatttggat-aacagcttatttgcagcttataagacaagtgttgatcatgatatgatgtgcctatgtataagctatttctacagcaaaagatga 445  Q
    ||||||| ||||||| ||||||| ||||||||||||||  ||||||| | ||||||||| |   ||| ||| ||||||||||||||| |||||||||| |    
T  264246 aggccctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataag---tgcttatatataagctatttctaaagcaaaagataa 264342  T
Q  446 aataaagtttaattgtttt 464  Q
    ||||||||| ||| |||||    
T  264343 aataaagttaaatcgtttt 264361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 29274359 - 29274309
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    ||||||||||||||||||| |||||||||| |||||||||  |||||||||    
T  29274359 tatgtataagctatttctatagcaaaagataaaataaagtcaaattgtttt 29274309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 493
Target Start/End: Original strand, 4006649 - 4006733
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    |||| |||| ||||| |||||||| | |||| ||| |||||||||  |||||||||||   |||||||||||||||| |||||||    
T  4006649 gtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagc 4006733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 9093686 - 9093607
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagta-aagctataagttgtttccataagc 493  Q
    |||| |||||||||||||| | |||||||| |||||||||| ||||| |||| ||| |||||||||| ||||| |||||||    
T  9093686 tatggataagctatttctatatcaaaagataaaataaagttaaattg-ttttcgtataagctataagctgttttcataagc 9093607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 465
Target Start/End: Complemental strand, 430506 - 430455
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||||||||||| |  |||||||||||||||||| |||| |||||    
T  430506 tatgtataagctatttctatataaaaagatgaaataaagttaaattattttt 430455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 485
Target Start/End: Complemental strand, 6310354 - 6310283
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgttt 485  Q
    ||||||||| | ||||||| | ||||||||||| |||||| |||||||||| |   ||||||||||||||||    
T  6310354 tatgtataatcaatttctataacaaaagatgaagtaaagtctaattgttttcatataagctataagttgttt 6310283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 465
Target Start/End: Original strand, 8147647 - 8147693
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||| || |||||||||| |||||||||| ||||||||||    
T  8147647 ataagctatttttatagcaaaagataaaataaagttgaattgttttt 8147693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 20671995 - 20671945
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    ||||||||||||||||||| | |||||||| |||||||||  |||||||||    
T  20671995 tatgtataagctatttctagatcaaaagataaaataaagtcaaattgtttt 20671945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 493
Target Start/End: Original strand, 25099977 - 25100062
Alignment:
Q  409 gtgcctatgtat-aagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    |||| ||||||| |||||||||||| ||||||| |||||||| |||  ||||||||| |   ||| |||||||||||| |||||||    
T  25099977 gtgcttatgtatcaagctatttctaaagcaaaatatgaaatagagtcaaattgttttcatagaagttataagttgttttcataagc 25100062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 384
Target Start/End: Complemental strand, 30536740 - 30536711
Alignment:
Q  355 tttggataacagcttatttgcagcttataa 384  Q
    ||||||||||||||||||||||||||||||    
T  30536740 tttggataacagcttatttgcagcttataa 30536711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 2454948 - 2454988
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaata 449  Q
    |||| |||||| ||||||||||||||||||||||| |||||    
T  2454948 gtgcttatgtaaaagctatttctacagcaaaagataaaata 2454988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 493
Target Start/End: Complemental strand, 37842489 - 37842406
Alignment:
Q  410 tgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||     |||||||||||||||| |||||||    
T  37842489 tgcctatgtataagctatttctatagcaaaagatgaaataaagttaaactgtgttcgaataagctataagttgttttcataagc 37842406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 48748719 - 48748663
Alignment:
Q  407 atgtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  48748719 atgtgcttatgtataagctatttctata-caaaagatgaaataaagttaaattgtttt 48748663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 491
Target Start/End: Original strand, 1432455 - 1432532
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataa 491  Q
    ||||||||||||||||||| || ||||||| ||||| |||| ||||||||||    ||||||||| |||||| |||||    
T  1432455 tatgtataagctatttctatagtaaaagataaaatagagttcaattgtttttttataagctataaattgttttcataa 1432532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 493
Target Start/End: Original strand, 34952153 - 34952234
Alignment:
Q  412 cctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    ||||||||||||||||||||| |||| ||| | |||||||||| |||||||||     ||||| |||||||||| |||||||    
T  34952153 cctatgtataagctatttctagagcagaagttaaaataaagttaaattgttttcgaataagctgtaagttgttttcataagc 34952234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 38578469 - 38578544
Alignment:
Q  416 tgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagta-aagctataagttgtttccataa 491  Q
    ||||||||||||||||| | |||||||| | |||||||| |||| ||||| ||| |||||||||||||||| |||||    
T  38578469 tgtataagctatttctataacaaaagataacataaagttaaattattttt-gtataagctataagttgtttacataa 38578544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 49888707 - 49888786
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagta-aagctataagttgtttccataagc 493  Q
    ||||||||||||||||||   | ||||||| |||||||||||||||| |||| ||| ||||||| |||||||| |||||||    
T  49888707 tatgtataagctatttctttggaaaaagataaaataaagtttaattg-ttttcgtataagctattagttgttttcataagc 49888786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 4256172 - 4256122
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    ||||||||||||||||||||| ||||||||  ||||||||| |||| ||||    
T  4256172 tatgtataagctatttctacaacaaaagatacaataaagttaaattatttt 4256122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 9572237 - 9572187
Alignment:
Q  415 atgtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    |||||| ||||||||||| |||||||||| |||||||||| ||||| ||||    
T  9572237 atgtattagctatttctatagcaaaagataaaataaagttaaattgctttt 9572187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 465
Target Start/End: Original strand, 14331734 - 14331780
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||||||||| | ||||| |||||||||| ||||||||||    
T  14331734 ataagctatttctacagaacaagataaaataaagttaaattgttttt 14331780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 490
Target Start/End: Original strand, 49557083 - 49557157
Alignment:
Q  416 tgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccata 490  Q
    |||||||| |||||||| | |||||||| |||||||||| ||| || || | | |||||||||||||||| ||||    
T  49557083 tgtataagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 3887762 - 3887717
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaatt 459  Q
    ||||||||||||||||| | |||||||||| |||||||||| ||||    
T  3887762 tatgtataagctatttcaatagcaaaagataaaataaagttaaatt 3887717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 8852801 - 8852850
Alignment:
Q  415 atgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    ||||||||||||||| |||| |||||||| ||||||||||  ||||||||    
T  8852801 atgtataagctatttttacaacaaaagataaaataaagttatattgtttt 8852850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 27146378 - 27146341
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaa 451  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  27146378 tatgtataaggtatttctacagcaaaagataaaataaa 27146341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 6074417 - 6074485
Alignment:
Q  417 gtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgttt 485  Q
    |||||||||||||||| | |||||||||| |||||||| || |||||| |   ||||||| ||||||||    
T  6074417 gtataagctatttctataacaaaagatgatataaagttaaactgttttcatataagctatgagttgttt 6074485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 7244787 - 7244709
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagta-aagctataagttgtttccataagc 493  Q
    ||||||||||||||||||||| | |||||| |||| ||| ||||||| |||| ||| |||||||| ||||||| |||||||    
T  7244787 tatgtataagctatttctacaccgaaagataaaat-aaggttaattg-ttttcgtataagctatacgttgttttcataagc 7244709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 42597341 - 42597420
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    ||||||||||||||||||| | |||||||| |||||||||  ||||||||| |   |||||||||||||||| |||||||    
T  42597341 tatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataagc 42597420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 465
Target Start/End: Complemental strand, 40598983 - 40598932
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||||||||||| | ||||||||| ||||||||| ||||||||||    
T  40598983 tatgtataagctatttctaaaacaaaagatggaataaagttaaattgttttt 40598932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 4558738 - 4558817
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    ||||||||||||||||||| |  ||||||| |||||||||| |||| |||| |   | |||||||| |||||||||||||    
T  4558738 tatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagc 4558817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 10114425 - 10114479
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||| ||||||||||||||||||| |||||||||| |||| ||||| |||||||||    
T  10114425 gtgcttatgtataagctatttctatagcaaaagataaaat-aagttgaattgtttt 10114479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 13652150 - 13652205
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||| ||||||||||||||||||| ||||||||||| ||| ||||  |||||||||    
T  13652150 gtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgtttt 13652205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 13710793 - 13710848
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||| ||||||||||||||||||| ||||||||||| ||| ||||  |||||||||    
T  13710793 gtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgtttt 13710848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 10727132 - 10727174
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaa 451  Q
    |||| |||| |||||||||||||| ||||||||||||||||||    
T  10727132 gtgcttatgcataagctatttctatagcaaaagatgaaataaa 10727174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 485
Target Start/End: Complemental strand, 16211015 - 16210945
Alignment:
Q  415 atgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgttt 485  Q
    |||||||||||||||||| || ||| ||| ||||||||||  |||||||| |   ||||||||||||||||    
T  16211015 atgtataagctatttctatagtaaatgataaaataaagttacattgttttcatataagctataagttgttt 16210945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 34770854 - 34770911
Alignment:
Q  436 caaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    |||||||| |||||||||  ||||||||| | | |||||||||||||||| |||||||    
T  34770854 caaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataagc 34770911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 26215436 - 26215476
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtt 454  Q
    ||||||||||||||||||| | |||||||| ||||||||||    
T  26215436 tatgtataagctatttctataacaaaagataaaataaagtt 26215476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 416 - 490
Target Start/End: Complemental strand, 44061151 - 44061077
Alignment:
Q  416 tgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccata 490  Q
    ||||||||||||||||| |||||||||| |||||| ||| ||||||||||    |||||||||||||||| ||||    
T  44061151 tgtataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgttttcata 44061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 485
Target Start/End: Complemental strand, 30956751 - 30956685
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgtttttagta-aagctataagttgttt 485  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||| ||| | ||||||||||||||    
T  30956751 ataagctatttctatagcaaaagataaaataaagttaaattgttttt-gtataggctataagttgttt 30956685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 485
Target Start/End: Complemental strand, 30972563 - 30972497
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgtttttagta-aagctataagttgttt 485  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||| ||| | ||||||||||||||    
T  30972563 ataagctatttctatagcaaaagataaaataaagttaaattgttttt-gtataggctataagttgttt 30972497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 2128381 - 2128331
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    ||||||||||||||||||| | |||||||| |||||||||| |||||||||    
T  2128381 tatgtataagctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 485
Target Start/End: Complemental strand, 40122882 - 40122812
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgttt 485  Q
    ||||||||||||||||| | | |||||||| |||||||||  || |||||| | ||||||||||||||||||    
T  40122882 tatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttca-taaagctataagttgttt 40122812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 46778353 - 46778307
Alignment:
Q  418 tataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    ||||||||||||||| ||||| |||| |||||||||| |||||||||    
T  46778353 tataagctatttctatagcaagagataaaataaagttaaattgtttt 46778307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 485
Target Start/End: Original strand, 48397587 - 48397657
Alignment:
Q  415 atgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgttt 485  Q
    ||||||||| ||||| || |  ||||||| |||||||||  ||||||||||| | ||||||||||||||||    
T  48397587 atgtataagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttt 48397657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 15304472 - 15304427
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||||||||||||| | |||||||| |||||||||| |||||||||    
T  15304472 ataagctatttctataacaaaagataaaataaagttaaattgtttt 15304427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 42809242 - 42809291
Alignment:
Q  415 atgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||||||||||||||||| | |||||||| ||||| |||| |||||||||    
T  42809242 atgtataagctatttctataacaaaagataaaatatagttaaattgtttt 42809291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 1395606 - 1395650
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagt 453  Q
    |||| ||||||||||||||||||| | |||||||| |||||||||    
T  1395606 gtgcatatgtataagctatttctataacaaaagataaaataaagt 1395650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 42808923 - 42808971
Alignment:
Q  418 tataagctatttctacagcaaaagatgaaataaagtttaattgttttta 466  Q
    |||||||| |||||| | |||||||| |||||||||| |||||||||||    
T  42808923 tataagctgtttctataacaaaagataaaataaagttaaattgttttta 42808971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 415 - 493
Target Start/End: Original strand, 18066069 - 18066147
Alignment:
Q  415 atgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    ||||| ||||||||||||||| |||| ||||||||||||| ||||||||| |   |||||||||| ||||| |||||||    
T  18066069 atgtagaagctatttctacagtaaaatatgaaataaagttaaattgttttcatataagctataagctgttttcataagc 18066147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 26143769 - 26143726
Alignment:
Q  416 tgtataagctatttctacagcaaaagatgaaataaagtttaatt 459  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||    
T  26143769 tgtataagctatttctatagcaaaagataaaataaagttcaatt 26143726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 9195404 - 9195358
Alignment:
Q  418 tataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||||| ||||| || |||||||||| ||||||||||||||||||||    
T  9195404 tataagttatttataaagcaaaagataaaataaagtttaattgtttt 9195358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 4026752 - 4026808
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    |||| ||| |||||||||||| || |||||||||| |||||||||| |||| |||||    
T  4026752 gtgcttatctataagctatttttatagcaaaagataaaataaagttaaattattttt 4026808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 5133712 - 5133764
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgttttta 466  Q
    ||||||||||||||||||| | |||||||| |||||||| | || ||||||||    
T  5133712 tatgtataagctatttctataacaaaagataaaataaagataaactgttttta 5133764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 493
Target Start/End: Original strand, 10143107 - 10143191
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    |||| |||||||||| |||||||| | |||||||| |||| ||||  || ||||||||   |||||||||||| ||| |||||||    
T  10143107 gtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataagc 10143191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 12215742 - 12215786
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagt 453  Q
    |||| ||||||||| ||||||||||| |||||||| |||||||||    
T  12215742 gtgcttatgtataaactatttctacaacaaaagataaaataaagt 12215786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 15173465 - 15173505
Alignment:
Q  413 ctatgtataagctatttctacagcaaaagatgaaataaagt 453  Q
    ||||||||||| |||||||| | ||||||||||||||||||    
T  15173465 ctatgtataagttatttctataacaaaagatgaaataaagt 15173505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 42420421 - 42420373
Alignment:
Q  417 gtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||||| || |||||||||| |||||| ||| ||||||||||    
T  42420421 gtataagctatttttatagcaaaagataaaataacgttaaattgttttt 42420373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 43141498 - 43141538
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtt 454  Q
    ||||||||||||||||||| ||||| |||| ||||||||||    
T  43141498 tatgtataagctatttctagagcaatagataaaataaagtt 43141538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 493
Target Start/End: Original strand, 27548198 - 27548282
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccataagc 493  Q
    |||| ||| |||||||||||||   |||||||||| ||||||||| |||||||||| | | |||||||||| ||||| |||||||    
T  27548198 gtgcttatctataagctatttccttagcaaaagataaaataaagtctaattgttttcatttaagctataagctgttttcataagc 27548282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 485
Target Start/End: Original strand, 119855 - 119921
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaa-gctataagttgttt 485  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||| | ||||| ||||||||||||||    
T  119855 ataagctatttctacaggaaaagataaaataaagttaaattgtttgt-gtaaatgctataagttgttt 119921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 465
Target Start/End: Original strand, 48469989 - 48470035
Alignment:
Q  419 ataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  48469989 ataagctatttctacagcaaaagataaaattaagttaaattgttttt 48470035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 465
Target Start/End: Complemental strand, 43153030 - 43152981
Alignment:
Q  416 tgtataagctatttctacagcaaaagatgaaataaagtttaattgttttt 465  Q
    ||||||||||||||||| | |||||||| |||||||||| ||||||||||    
T  43153030 tgtataagctatttctataacaaaagataaaataaagttaaattgttttt 43152981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 39393770 - 39393712
Alignment:
Q  347 aggccctatttggat-aacagcttatttgcagcttataagacaagtgttgatcatgata 404  Q
    ||||||| ||||||| ||||||||||||||||||||||  |||||  ||||||||||||    
T  39393770 aggccctgtttggatgaacagcttatttgcagcttatagcacaagctttgatcatgata 39393712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 37064586 - 37064542
Alignment:
Q  422 agctatttctacagcaaaagatgaaataaagtttaattgttttta 466  Q
    ||||||||||| ||| |||||||||||| |||| |||||||||||    
T  37064586 agctatttctatagccaaagatgaaatacagttaaattgttttta 37064542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 49060480 - 49060556
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttttagtaaagctataagttgtttccata 490  Q
    ||||||||||||||||||| | ||||| || |||||||||  |||| ||||||   |||||||||||| ||| ||||    
T  49060480 tatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 21408 - 21358
Alignment:
Q  414 tatgtataagctatttctacagcaaaagatgaaataaagtttaattgtttt 464  Q
    |||||||||||||||| || || ||||||| |||||||||| |||||||||    
T  21408 tatgtataagctatttttataggaaaagataaaataaagttaaattgtttt 21358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 1209 - 1165
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagt 453  Q
    |||| ||||||||||||||||||| | |||||||| |||||||||    
T  1209 gtgcttatgtataagctatttctataacaaaagataaaataaagt 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 2766 - 2810
Alignment:
Q  409 gtgcctatgtataagctatttctacagcaaaagatgaaataaagt 453  Q
    |||| ||||||||||||||||||| | |||||||| |||||||||    
T  2766 gtgcttatgtataagctatttctataacaaaagataaaataaagt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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