View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18333_low_2 (Length: 393)
Name: NF18333_low_2
Description: NF18333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18333_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 34658582 - 34658944
Alignment:
| Q |
19 |
ttatttgggatggtggtattatgggcagtgaacgttccctacaagnnnnnnnnnnccaaaatagaaatgtgaacttgagaaaatatgaacttgttaaatt |
118 |
Q |
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| T |
34658582 |
ttatttgggatggtagtattatgggcagtgaacgttccctacaagtttttgtt--ccaaaatagaaatgtgaacttgagaaaatatgaacttgttaaatt |
34658679 |
T |
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| Q |
119 |
gtccttctcaattctcatctacctttgaataactaattacctttcaaggattggttggttcttagaatatcaataagagtacgtattattataattagtc |
218 |
Q |
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| T |
34658680 |
gtccttctcaattctcatctacctttgaataactaattacctttcagggattggttggttcttagaatagcaataagagtacgtattattataattagtc |
34658779 |
T |
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| Q |
219 |
tgatgagttatctttcggaaagcaagattgtgtagccaaaagtgtatacgtatacgtcctctaatcatttgcttcattttattttattttataaatcatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34658780 |
tgatgagttatctttcggaaagcaagattgtgtagccaaaagtgtatacgtatacgtcctctaatcatttggttcattttattttattttataaatcatt |
34658879 |
T |
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| Q |
319 |
agggccaattttaatcatacacaagacacggacaatcattttatgtaatcacattcacacctatg |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658880 |
agggccaattttaatcatacacaagacacggacaatcattttatgtaatcacattcacacctatg |
34658944 |
T |
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