View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18333_low_5 (Length: 254)
Name: NF18333_low_5
Description: NF18333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18333_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 25900419 - 25900368
Alignment:
| Q |
189 |
gagacctgttgtgccatttggtagtgcaagtagaaagcctcatgttgattct |
240 |
Q |
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| T |
25900419 |
gagacctgttgcgccatttggtagtgcaagtagaaagcctcatgttgattct |
25900368 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 40067818 - 40067869
Alignment:
| Q |
189 |
gagacctgttgtgccatttggtagtgcaagtagaaagcctcatgttgattct |
240 |
Q |
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||||||||| | ||| ||||| |||||||||||||||||||||||||||||| |
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| T |
40067818 |
gagacctgtcgcgccttttggaagtgcaagtagaaagcctcatgttgattct |
40067869 |
T |
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