View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18334_high_11 (Length: 231)
Name: NF18334_high_11
Description: NF18334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18334_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 2486026 - 2486220
Alignment:
| Q |
22 |
acagaaacgatatgtaaagaaagattgtggcagctatgcttgggcatnnnnnnnnctatggtaattaagagtcgagtactgcaacatggtgacaggatta |
121 |
Q |
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| T |
2486026 |
acagaaacgatatgtaaggaaagattgtggcagctatgcttgggcataaaaaaaactacggtaattaagagtcgagtactgcaacatggtgacaggatta |
2486125 |
T |
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| Q |
122 |
tgccatggtttggcgtctgcgaggctcacaaacgattgaatattgccaactagagcactgcttgaaagggcccataattaaatttatttattatt |
216 |
Q |
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| T |
2486126 |
tgccatggtttggcgtctgcgaggctcacaaacgattgaatattgccaacgagagcactgcttgaaagggcccataattaaatttatttattatt |
2486220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 768902 - 768818
Alignment:
| Q |
26 |
aaacgatatgtaaagaaagattgtggcagctatgcttgggcatnnnnnnnnctatggtaattaagagtcgagtactgcaacatggt |
111 |
Q |
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|||| |||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||| |||||||||| |
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| T |
768902 |
aaacaatatgtaaagaaagattgtggcagatatgcatgggaataaaaaaaa-tatggtaattaagagtcgagtacagcaacatggt |
768818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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