View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18334_high_13 (Length: 225)
Name: NF18334_high_13
Description: NF18334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18334_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 31525598 - 31525430
Alignment:
| Q |
33 |
cacgcttctcttaatagttatcccatttgtatttcttcatcctttatcccatttgcctcaccaaaacatccacaataattatactccaagaaatcac-tt |
131 |
Q |
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| T |
31525598 |
cacgcttctcttaatagttatctcatttgtatttcttcatcctttatcccattcgcctcaccaaaacatccccaataattatactccaagaaatcacttt |
31525499 |
T |
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| Q |
132 |
gataattttgtaaaaaagtatagtacaaccacatagttgtctgatttggattaattgacatgttcctat |
200 |
Q |
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| T |
31525498 |
gataattttgtaaaaaagtatagtacaaccacatagttgtctgatttggatgaattgacatgttcctat |
31525430 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 47236715 - 47236669
Alignment:
| Q |
118 |
ccaagaaatcacttgataattttgtaaaaaagtatagtacaaccaca |
164 |
Q |
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| T |
47236715 |
ccaagaattcacttgataatcttgtaaaaatgtatagcacaaccaca |
47236669 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 27602893 - 27602852
Alignment:
| Q |
139 |
ttgtaaaaaagtatagtacaaccacatagttgtctgatttgg |
180 |
Q |
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|||||| |||||||||||| |||||| ||||||||||||||| |
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| T |
27602893 |
ttgtaagaaagtatagtacgaccacaaagttgtctgatttgg |
27602852 |
T |
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