View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18334_high_4 (Length: 321)
Name: NF18334_high_4
Description: NF18334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18334_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 20571881 - 20571766
Alignment:
| Q |
197 |
tccaataagaaaagatgaagtatgtgtttggaaacctggctagttagaaatttccacgtttcgaagcgtttttaccgttaaaattgataagctacaaaaa |
296 |
Q |
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| T |
20571881 |
tccaatgaaaaaagatgaaatatgtgtttggaaacctgactggttagaaatttccgcatttcgaagcgtttttaccgtgaaaattgagaagctaaaaaaa |
20571782 |
T |
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| Q |
297 |
gcagcatcaatctaaa |
312 |
Q |
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| T |
20571781 |
gcagcatcaatctaaa |
20571766 |
T |
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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20571996 - 20571947
Alignment:
| Q |
1 |
atttatatcttcaacatgttttaatctcaaattaaaatcatttaaacacc |
50 |
Q |
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| T |
20571996 |
atttatatcttcaacatgttttaatctcaaattaaaatcatttaaacacc |
20571947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 12776482 - 12776566
Alignment:
| Q |
221 |
tgtttggaaacctggctagttagaaatttccacgtttcgaagcgtttttaccgttaaaattgataagctacaaaaagcagcatca |
305 |
Q |
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| T |
12776482 |
tgtttggaaacccggctagttagaaatttccgcgttacaaagcaatttcaccgtgaaaattgggaagctacaaaaagtagcatca |
12776566 |
T |
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