View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18334_high_5 (Length: 320)
Name: NF18334_high_5
Description: NF18334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18334_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 11350499 - 11350818
Alignment:
| Q |
1 |
cccaatatccacgttcacacatagtatattatactataggagtattaaaacagtcacatatatagcctttattatatattccttcttcattaaataacct |
100 |
Q |
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| T |
11350499 |
cccaatatccacgttcacacatagtatattatactataggagtattaaaatagtcacatatatagcctttattatatattccttcttcattaaataacct |
11350598 |
T |
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| Q |
101 |
tcataatcatatctcaaagcagaataaaaagcaacagaaccaacaacttctcagtcagatcttattaccatgatatatcagactcattcatgtgttgtga |
200 |
Q |
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| T |
11350599 |
tcataatcatatcccaaagcagaataaaaagcaacagaaccaacaacttctcagtcagatcttattaccatgatatctcagactcattcatgtgttgtga |
11350698 |
T |
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| Q |
201 |
ttgcaacaataatattttttgttactgtaggagtaaattccatttcagaagttgataagataagtagtttacctcagcagccaaaagtaggatttcaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11350699 |
ttgcaacaataatattttttgttactgtaggagtaaattccatttcagaagttgataagataagtagtttacctcagcagccaaaagtaggatttcaaca |
11350798 |
T |
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| Q |
301 |
atatgctggttacattacag |
320 |
Q |
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|||||||||||||||||||| |
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| T |
11350799 |
atatgctggttacattacag |
11350818 |
T |
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