View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18334_low_14 (Length: 204)
Name: NF18334_low_14
Description: NF18334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18334_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 27643518 - 27643348
Alignment:
| Q |
16 |
acagagttgtgaaattgagtaatgtatttaatattttgttgtatagaaggtctttgtttgtgccttctctctttattttcttgatct-tgatgttgattt |
114 |
Q |
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| T |
27643518 |
acagagttgtgaaattgagtaatgtatttaatattttgttgtatagaaggtctttgtttgtgccttctctctttattttcttgatctgtgatgttgattt |
27643419 |
T |
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| Q |
115 |
agggttgaatgaaatgcagttgaagaatacaatgagagggtcttcctaagaatcattggctattcaagttactgt |
189 |
Q |
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| T |
27643418 |
ag----gattgaaatgcagttgaagaatacaatgagagggtcttcctaagaatcattggctattcaagttactgt |
27643348 |
T |
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