View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18334_low_2 (Length: 374)
Name: NF18334_low_2
Description: NF18334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18334_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 46 - 358
Target Start/End: Complemental strand, 20571618 - 20571306
Alignment:
| Q |
46 |
tgttgttgaaaattcgctgatctccaaaacgtgatgtgacctccctccttggtatcttgcatcgtgttgcatgcannnnnnnnnnctttctaaaacgtga |
145 |
Q |
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| T |
20571618 |
tgttgttgaaaattcgctgatctccaaaacgtgatgtgacctccctccttggtatcttgcatcgtgttgcgtgcattttttttt-ctttccaaaacgtga |
20571520 |
T |
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| Q |
146 |
ttcatcctcatcacaaaacgtacggcctttatttatcttcattttttgtggaaaaggaagtacgtactcctccttggttgtgaattgtgatgatatatat |
245 |
Q |
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| T |
20571519 |
ttcatcctcatcacaaaacgtacggcctttatttatcttcattttttgtggaaaaggaagtacgtactcctccttggttgtgaattgtgatgatatatat |
20571420 |
T |
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| Q |
246 |
agtgtatagagtgac--acacctaaaaaatactacctaaactctaaagctggtaaacactagtaaaattatttgtcatacatacatactgctggttttat |
343 |
Q |
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| T |
20571419 |
agagtatagagtgacacacacctaaaaaatactacctaaactctaaa-ctggtaaacactagtaaaattatttgtcatacatacatactgctggttatat |
20571321 |
T |
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| Q |
344 |
aagaagggtggagag |
358 |
Q |
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| T |
20571320 |
aagaagggtgaagag |
20571306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 20571721 - 20571692
Alignment:
| Q |
2 |
aaaaatgtcgtcataaaaattattcaaaat |
31 |
Q |
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| T |
20571721 |
aaaaatgtcgtcataaaaattattcaaaat |
20571692 |
T |
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