View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18334_low_3 (Length: 346)
Name: NF18334_low_3
Description: NF18334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18334_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 1793703 - 1794016
Alignment:
| Q |
18 |
gtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaaatagaacttatgagtcaggctca |
117 |
Q |
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| T |
1793703 |
gtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaaatagaacttatgagtcaggctca |
1793802 |
T |
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| Q |
118 |
atttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgccctttttgtacgaacct |
217 |
Q |
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| T |
1793803 |
atttagtgtagtagagtccttt-aatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgtcctttttgtacgaacct |
1793901 |
T |
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| Q |
218 |
cccccctttgatttttggatttgtaacaattgtgtgtaggcaggaca--tggagtagtctgtcgagttttaatatgctctatgtctctcttatgcatact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1793902 |
cccccctttgatttttggatttgtaacaattgtgtgtaggcacgacatgtgaagtagtctgtcgagttttaatatgctctatgtctctcttatgcatact |
1794001 |
T |
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| Q |
316 |
atctttccgcctttg |
330 |
Q |
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|||||||| |||||| |
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| T |
1794002 |
atctttcctcctttg |
1794016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 2007513 - 2007587
Alignment:
| Q |
18 |
gtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
92 |
Q |
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| T |
2007513 |
gtatttttttagtgcctttcaagttcccaatccagtattggaaattattttctaaaacttgtacacttgagttac |
2007587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 2007641 - 2007708
Alignment:
| Q |
118 |
atttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaata |
186 |
Q |
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| T |
2007641 |
atttagtgcagtagaaccctataaatcagagactcatgtatcttctttttcatc-tttatcaatcaata |
2007708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 2020746 - 2020788
Alignment:
| Q |
50 |
tagtattggaagtttgattctaaaacttgtacacttgagttac |
92 |
Q |
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| T |
2020746 |
tagtattggaagttagtttctaaaacttgtacacttgagttac |
2020788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 2012997 - 2013074
Alignment:
| Q |
18 |
gtatttgtctagtgccttt-caagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaa |
94 |
Q |
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| T |
2012997 |
gtatttgtttagtgccttttctagttcctaatctagtattggaagttagtttctaaaatttgtgcacttgagctacaa |
2013074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 2007731 - 2007807
Alignment:
| Q |
183 |
aatatactttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggca |
259 |
Q |
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| T |
2007731 |
aatatactttttatttttcctatgtatacaaaccttccccctttgatttatagatttgtaacaattgcatgtaggca |
2007807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 20954211 - 20954255
Alignment:
| Q |
279 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
323 |
Q |
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| T |
20954211 |
gagttttaatatgctctatgtccctcttatgcatactatctttcc |
20954255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 20935971 - 20936014
Alignment:
| Q |
279 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
323 |
Q |
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| T |
20935971 |
gagttttaatatgctctatgcct-tcttatgcatactatctttcc |
20936014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 39275112 - 39275156
Alignment:
| Q |
279 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
323 |
Q |
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| T |
39275112 |
gagttttaataggttatatgtctctcttatgcatacaatctttcc |
39275156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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