View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_high_14 (Length: 364)
Name: NF18335_high_14
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 93 - 347
Target Start/End: Complemental strand, 24581524 - 24581271
Alignment:
| Q |
93 |
atactcatttaattgaaccgtttagaaacttagggaatgatactatcagactaaatatgcaatcatatcattcaattatcatgagttaactccatattan |
192 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24581524 |
atactcatttaattgaaccgtttagaaaattatggaatgatactagcagactaaatatgcaatcatatcattcaactatcatgagttaactccatattat |
24581425 |
T |
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| Q |
193 |
nnnnnnccgaggcataattccttagagtgcacatacacatgatgtattttttaacaaatattgtttagcagtttaatcaaaaaactgatatatgttcatc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
24581424 |
ttttttccgaggcataattccttagagtgcacatacacatgatgtattttttaacaaatattgtttagcggtttaatc-aaaaactgatatatgttcatc |
24581326 |
T |
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| Q |
293 |
atttgcaacgattttaatcaacatctcactcttattttatttatgaaatgatttg |
347 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24581325 |
atttgcaacaattttaatcaacatctcactcttatttcatttatgaaatgatttg |
24581271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 24599523 - 24599437
Alignment:
| Q |
11 |
agagaagaggaagagaaagttgtgacataaaagaaaagttgtcgtacaatcgtacaataaactaaactaagatttggagatgatact |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24599523 |
agagaagaggaagagaaagttgtgacataaaagaaaagttttcgtacaatcgtacaataaactaaactaagatttggagatgatact |
24599437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 51970198 - 51970143
Alignment:
| Q |
14 |
gaagaggaagagaaagttgtgacataaaagaaaagttgtcgtacaatcgtacaata |
69 |
Q |
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| T |
51970198 |
gaagaggaagaaaaagttgtgacataagagaaaagatgtcgtacagccgtacaata |
51970143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 18902828 - 18902782
Alignment:
| Q |
14 |
gaagaggaagagaaagttgtgacataaaagaaaagttgtcgtacaat |
60 |
Q |
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|||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
18902828 |
gaagagcaagataaagttgtgacataagagaaaagttgtcgtacaat |
18902782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 24772498 - 24772562
Alignment:
| Q |
15 |
aagaggaagagaaagttgtgacataaaagaaaagttgtcgtacaatcgtacaataaactaaacta |
79 |
Q |
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|||||||| | |||||||| | |||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
24772498 |
aagaggaaaaaaaagttgtaagataagagaaaagttgtcatacaatcgtacaataaactaaacta |
24772562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 27905169 - 27905232
Alignment:
| Q |
14 |
gaagaggaagagaaagttgtgacataaaagaaaagttgtcgtacaatcgtacaataaactaaac |
77 |
Q |
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||||||||| | ||||||||||||||| |||||| |||| |||||| |||||||||| ||||| |
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| T |
27905169 |
gaagaggaatataaagttgtgacataagagaaaatatgtcatacaattgtacaataaattaaac |
27905232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 9578774 - 9578712
Alignment:
| Q |
18 |
aggaagagaaagttgtgacataaaagaaaagttgtcgtacaatcgtacaataaactaaactaa |
80 |
Q |
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|||||||||||||||| |||||| |||||| |||| || || ||||||||||||||||||||| |
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| T |
9578774 |
aggaagagaaagttgtaacataagagaaaaattgttgtgcagtcgtacaataaactaaactaa |
9578712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 52689486 - 52689533
Alignment:
| Q |
14 |
gaagaggaagagaaagttgtgacataaaa-gaaaagttgtcgtacaat |
60 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
52689486 |
gaagaggaagagaaaactgtgacataaaaagaaaagttgtcgtacaat |
52689533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 23210252 - 23210298
Alignment:
| Q |
14 |
gaagaggaagagaaagttgtgacataaaagaaaagttgtcgtacaat |
60 |
Q |
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||||||| |||||||||||||| |||| |||||||||||||| |||| |
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| T |
23210252 |
gaagagggagagaaagttgtgatataagagaaaagttgtcgtgcaat |
23210298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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