View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18335_high_15 (Length: 352)
Name: NF18335_high_15
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_15 |
 | |
|
| [»] scaffold0341 (4 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 6522006 - 6522328
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522006 |
ttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctag |
6522105 |
T |
|
| Q |
101 |
aattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaacgccatcagattcaccctcgccatcaccggtgcctgtgcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522106 |
aattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaacgccatcagattcaccctcgccatcaccggtgcctgtgcca |
6522205 |
T |
|
| Q |
201 |
gtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522206 |
gtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgata |
6522305 |
T |
|
| Q |
301 |
tattaaatatttaatgtctcact |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6522306 |
tattaaatatttaatgtctcact |
6522328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 6517028 - 6516870
Alignment:
| Q |
2 |
tcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctaga |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||| | |||||||| |
|
|
| T |
6517028 |
tcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagtgctaga |
6516929 |
T |
|
| Q |
102 |
attgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaac |
160 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
6516928 |
gttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaac |
6516870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 6512630 - 6512475
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||| ||| ||| ||||||||||| ||||| |||||||| |
|
|
| T |
6512630 |
ttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggtgctag |
6512531 |
T |
|
| Q |
101 |
aattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
156 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
6512530 |
aattgttagaccaagttgttatttgagatatgaaaccgattcactcttctatcaac |
6512475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 6506723 - 6506562
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-tagg |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| |||| |
|
|
| T |
6506723 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtatagg |
6506624 |
T |
|
| Q |
95 |
tgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
156 |
Q |
| |
|
|| |||| || |||||||||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
6506623 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
6506562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 6506501 - 6506438
Alignment:
| Q |
199 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
262 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
6506501 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
6506438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 47778382 - 47778456
Alignment:
| Q |
62 |
agaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac |
136 |
Q |
| |
|
||||||||||| |||||||| |||||| | |||||||||||||||||||| || ||||||||||| | |||||| |
|
|
| T |
47778382 |
agaaatttcaagatgttgtaaaaataggattggtgctagaattgttagacctagctgtaatttgaggtttgaaac |
47778456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 47788475 - 47788578
Alignment:
| Q |
33 |
tgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatg |
132 |
Q |
| |
|
||||||||||||||| ||||||| || ||| |||||| ||||||| ||||||| | |||||||||||| ||||||| || ||||||||||| | || |
|
|
| T |
47788475 |
tgtgatgattgtttgcttcaatccattgctgaagtttcaagatgttgtagcaataggattggtgctagaattattagaccaagctgtaatttgaggtttg |
47788574 |
T |
|
| Q |
133 |
aaac |
136 |
Q |
| |
|
|||| |
|
|
| T |
47788575 |
aaac |
47788578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 748 - 587
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-tagg |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| |||| |
|
|
| T |
748 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtatagg |
649 |
T |
|
| Q |
95 |
tgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
156 |
Q |
| |
|
|| |||| || |||||||||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
648 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 8401 - 8240
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-tagg |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| |||| |
|
|
| T |
8401 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtatagg |
8302 |
T |
|
| Q |
95 |
tgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
156 |
Q |
| |
|
|| |||| || |||||||||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
8301 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
8240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 526 - 463
Alignment:
| Q |
199 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
262 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
526 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 8179 - 8116
Alignment:
| Q |
199 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
262 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
8179 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
8116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University