View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_high_18 (Length: 291)
Name: NF18335_high_18
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 37106476 - 37106645
Alignment:
| Q |
13 |
cacagaacacaaacagaaaacttcatgttcttttagaaaaaaccttaaaacctctctgnnnnnnnaggacnnnnnnnn-------ccaaagtgaggttta |
105 |
Q |
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| T |
37106476 |
cacagaacacaaacagaaaacttcatgttctttttgaaaaaaccttaaaacctctctgtttttt-aggacaaaaaaaaaaaagaaccaaagtgaggtttg |
37106574 |
T |
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| Q |
106 |
tgagaaacataacacaaaattcattcatacactaaatacaggaacaagtatttaacaatcaacagaacatc |
176 |
Q |
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| T |
37106575 |
tgagaaacataacacaaaattcattcatacactaaatacaggatcaagtatttaacaatcaacagaacatc |
37106645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 37106711 - 37106744
Alignment:
| Q |
242 |
ggtttttattacctgtaagaagatcctggtaaac |
275 |
Q |
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| T |
37106711 |
ggtttttattacctgtaagaagatcctggtaaac |
37106744 |
T |
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