View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_high_20 (Length: 266)
Name: NF18335_high_20
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14744916 - 14745164
Alignment:
| Q |
1 |
acatgaacaatgagaaaggcaaacagtaacaacgcaacagagagaacgatgctnnnnnnntggcaagaatgacgaatataatgatagctggaatgcactt |
100 |
Q |
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| T |
14744916 |
acatgaacaatgagaaaggcaaacagtaacaacacaacaaagagaacgatgctaaaaaaacggcaagaatgacgaatataatgatagctggaatgcactt |
14745015 |
T |
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| Q |
101 |
gggcaaaaacaa-gatgagtggtaaggggagatgatcagaaacgacgacaa----gagttaaggtaaagatgagttaagaaggcattgagtgaccaagaa |
195 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14745016 |
gggcaaaaacaatgatgagtggtaaggggagatgatcagaaacgacgacaacaacgagtgaaggtaaagatgagttaagaaggcattgagtgaccaagaa |
14745115 |
T |
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| Q |
196 |
gaagaataaagacgtaaggtttctttttggctgtgttttgagagagaat |
244 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14745116 |
gaagaataaagacgtaagggttctttttggctgtgttttgagagagaat |
14745164 |
T |
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