View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18335_high_21 (Length: 251)
Name: NF18335_high_21
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2574540 - 2574774
Alignment:
| Q |
1 |
acatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttctatcccttcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2574540 |
acatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttccatcccttcaat |
2574639 |
T |
|
| Q |
101 |
caaagttcaccagaccaaagtgggttgcaatgatggccaatcgaactatttctcatcatctaatccaaatcctaatattcatgtgggtgctattgttgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574640 |
caaagttcaccagaccaaagtgggttgcaatgatggccaatcgaactatttctcatcatctaatccaaatcctaatattcatgtgggtgctattgttgga |
2574739 |
T |
|
| Q |
201 |
ggaccaaattctaatgaccaatacaatgatgcaag |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574740 |
ggaccaaattctaatgaccaatacaatgatgcaag |
2574774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2564646 - 2564880
Alignment:
| Q |
1 |
acatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttctatcccttcaat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2564646 |
acatactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaat |
2564745 |
T |
|
| Q |
101 |
caaagttcaccagaccaaagtgggttgcaatgatggccaatcgaactatttctcatcatctaatccaaatcctaatattcatgtgggtgctattgttgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | | ||||||| || ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2564746 |
caaagttcaccagaccaaagtgggttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctatagttgga |
2564845 |
T |
|
| Q |
201 |
ggaccaaattctaatgaccaatacaatgatgcaag |
235 |
Q |
| |
|
|| || ||| ||||||||||| ||||||||||| |
|
|
| T |
2564846 |
ggccctgattttaatgaccaatttaatgatgcaag |
2564880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University