View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18335_high_27 (Length: 238)
Name: NF18335_high_27
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 32709057 - 32708852
Alignment:
| Q |
14 |
gcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaactta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32709057 |
gcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaactta |
32708958 |
T |
|
| Q |
114 |
tggctatagctcttaatgatatggtcttgcaggtaaattgtgacatcctaaatataatgtgttagtgttgatatttgatcatgcgtcactactagataga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32708957 |
tggctatagctcttaatgatatggtcttgcaggtaaattgtgacatcctaaatataatgtgttagtgttgatatttgatcatgcgtcactactagataga |
32708858 |
T |
|
| Q |
214 |
tcgaat |
219 |
Q |
| |
|
|||||| |
|
|
| T |
32708857 |
tcgaat |
32708852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 32627466 - 32627340
Alignment:
| Q |
24 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagc |
123 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||| || |
|
|
| T |
32627466 |
tagttgaagggggttgcatgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggc |
32627367 |
T |
|
| Q |
124 |
tcttaatgatatggtcttgcaggtaaa |
150 |
Q |
| |
|
||||||||| ||||||||| ||||||| |
|
|
| T |
32627366 |
tcttaatgacatggtcttggaggtaaa |
32627340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 32703557 - 32703490
Alignment:
| Q |
83 |
agcaaggagtgttgctacatttgggaacttatggctatagctcttaatgatatggtcttgcaggtaaa |
150 |
Q |
| |
|
||||| |||||||| ||| |||||||| |||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
32703557 |
agcaaagagtgttgttacgtttgggaagttatggctatgggtcttaatgaaatggtcttgcaggtaaa |
32703490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 27736364 - 27736240
Alignment:
| Q |
24 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagc |
123 |
Q |
| |
|
|||||||||| | || |||||||||||| |||||||||| ||| | ||||| | |||||||||||||| |||||||||||||| |||||||| || |
|
|
| T |
27736364 |
tagttgaaggagctcaaatgattctaacacttttaggaaggaaatgcgacaatccatcaagcaaggagtgttgttacatttgggaactcatggctatggc |
27736265 |
T |
|
| Q |
124 |
tcttaatgatatggtcttgcaggta |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27736264 |
ccttaatgatatggtcttgcaggta |
27736240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 5811091 - 5810967
Alignment:
| Q |
24 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaa-gaagtat--agcaaggagtgttgctacatttgggaacttatggctat |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||| ||| || || |||||||||| | | |||||||||||||| |||||||| |
|
|
| T |
5811091 |
tagttgaaggtggtcacatgattctaacatttttaggacgaaaaa---acagtgatccatcaagcaaggagtctggttacatttgggaactcatggctat |
5810995 |
T |
|
| Q |
121 |
agctcttaatgatatggtcttgcaggta |
148 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
5810994 |
ggctcttaatgatatggttttgcaggta |
5810967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 8030519 - 8030641
Alignment:
| Q |
26 |
gttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagctc |
125 |
Q |
| |
|
||||| || ||||| ||| |||| ||| | || |||||||||||||| | || |||||||| ||||||||||| |||||||| ||| | ||| | || | |
|
|
| T |
8030519 |
gttgacgggggtcgtatggttctcacaatcttgggaagaaaaagtgatgataaatatagcaaagagtgttgctatatttgggagcttcttgctgttgccc |
8030618 |
T |
|
| Q |
126 |
ttaatgatatggtcttgcaggta |
148 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
8030619 |
ttaatgacatggtcttggaggta |
8030641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 21943132 - 21943087
Alignment:
| Q |
103 |
ttgggaacttatggctatagctcttaatgatatggtcttgcaggta |
148 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
21943132 |
ttgggaacttttggctatggctcttaatgatatggttatgcaggta |
21943087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 20116764 - 20116800
Alignment:
| Q |
102 |
tttgggaacttatggctatagctcttaatgatatggt |
138 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
20116764 |
tttgggaacttttggctacagctcttaatgatatggt |
20116800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University