View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_high_3 (Length: 487)
Name: NF18335_high_3
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 46 - 475
Target Start/End: Complemental strand, 10842889 - 10842460
Alignment:
| Q |
46 |
ggttaaagtcattgtcaaaagtttgttcttctgacatccgacttaaatcatggtccaattgggagacttgagctttgagatttttggtagtgtttttgca |
145 |
Q |
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| T |
10842889 |
ggttaaagtcattctcaaaagtttgttcttctaacatccgacttaaatcatggtccaattgggagacttgagctttgagatttttggtagtgtttttgca |
10842790 |
T |
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| Q |
146 |
nnnnnnngagacaaactttaaaaaatttatctgcataatcttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaattta |
245 |
Q |
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| T |
10842789 |
tttttttgagacaaactttaaaaaatttatctgcataatcttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaattta |
10842690 |
T |
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| Q |
246 |
gaacttcctcaacttgagttgaaggtttaagttttccatcagactaaacttcatttggttgtatgaaaggtttggatgatctgttagtgatggggtcgat |
345 |
Q |
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| T |
10842689 |
gaacttcctcaacttgagttgaaggattaagttttccatcagactaaacttcatttggttgtataaaaggtttggatgatctgttagtgatggggtcgat |
10842590 |
T |
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| Q |
346 |
ttttctttctagagcagggaaatgttggttataatttgaagctgagaacatgattcaagggattggttcagtgnnnnnnncttataaattcctatccatg |
445 |
Q |
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| T |
10842589 |
ttttctttctagagcagggaaatgttggttacaatttgaagctgagaacatgattcaagggattggttcagtgtttttttcttataaattcctatccatg |
10842490 |
T |
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| Q |
446 |
caccattattagggtcaaattttctctgtg |
475 |
Q |
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| T |
10842489 |
caccattattagggtcaaattttctctgtg |
10842460 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 12347971 - 12347817
Alignment:
| Q |
186 |
ttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaatttagaacttcctcaacttgagttgaaggtttaagttttccatc |
285 |
Q |
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|||||||| |||| | |||||||| ||||||| ||| ||| | | ||| | |||||||| ||| || ||| |||| ||| | ||||||||||||| ||| |
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| T |
12347971 |
ttttgtcaagattttggagaatatccttttgagcaaccatattctcagactgccaatttaaaacctcttcagcttgggttaacggtttaagttttc-atc |
12347873 |
T |
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| Q |
286 |
agactaaacttcatttggttgtatgaaaggtttggatgatctgttagtgatggggt |
341 |
Q |
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| T |
12347872 |
tggctggacttcatttggttgtatgattggtttggatgatctgtttgtgattgggt |
12347817 |
T |
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