View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_high_5 (Length: 465)
Name: NF18335_high_5
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Complemental strand, 972133 - 971693
Alignment:
| Q |
11 |
cagagagcaaaatctcactggcttcaagcatgagataaaaattccaaatactttcacaaaaaagctactcagagaaataagagaaatactatcaagagta |
110 |
Q |
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| T |
972133 |
cagagagcaaaatctcactggcttcaagcacgagataaaaattccagatactttcacaaaaaagctactcagagaaataagagaaatactatcaagagta |
972034 |
T |
|
| Q |
111 |
ttcaggatgttgatgggagatgttggagtgacatcaatcatattaacagtatttttatagattatttcactaatatttttgctacttcaaaccccactaa |
210 |
Q |
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| T |
972033 |
ttcaggatgttgatgggagatgttggagtgacatcaatcatattaacagtatttttatagattatttcactaatatttttgctacttcaaaccccactaa |
971934 |
T |
|
| Q |
211 |
catgcaggatactattgaagttgttaaaaatataatcaagcctgatatgcatgagtacctctagcaagatttcactgctaccgaggtttttgaggctatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
971933 |
catgcaggatactattgaagttgttaaaaatataatcaagcctgatatgcatgagtacctctagcaagatttcactgctactgaggtttttgaggctatt |
971834 |
T |
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| Q |
311 |
agacagatgaaaagttcagctgcccctggaccagatggtttacctgccctgttctatcaatcctattgggcagaaattggtactgagattattgagtatg |
410 |
Q |
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| T |
971833 |
agacagatgaaaagttcagctgcccctggaccagatggtttacctgccctgttctatcaatcctattgggcagaaattggtactgagattattgagtatg |
971734 |
T |
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| Q |
411 |
cccttaatattcttaataacaatggagatcctggtaatatc |
451 |
Q |
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| T |
971733 |
cccttaatgttcttaataacaatggagatcctggtaatatc |
971693 |
T |
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