View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18335_high_7 (Length: 426)
Name: NF18335_high_7
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_high_7 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 23 - 421
Target Start/End: Original strand, 27968833 - 27969231
Alignment:
| Q |
23 |
gtccttcgttctaaagagctcctgcgctgcaaactccattcaatcatgattaccccaaatttcctttctcttgcagacttaaacttttaaaattgttgat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27968833 |
gtccttcgttctaaagagctcctgcgctgcaaactccattcaattatgattaccccaaatttcctttctcttgcagacttaaacttttaaaattgttgat |
27968932 |
T |
|
| Q |
123 |
ttgtttgacctttgaattgtagtggttttgaatgtatactaggcttattaattgaaatccataattgtttgtggtggtaaataattgataacagattcaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27968933 |
ttgtttgacctttgaattgtagtggttttgaatgtatactaggcttattaattgaaatccataattgtttgtggtggtaaataattgataacagattcaa |
27969032 |
T |
|
| Q |
223 |
tttttctacaatttctcatgcaccatttggtttcgtccccacaagttannnnnnnaacaaccattgtttttcctgggtgaatgtcaatgggtnnnnnnnt |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
27969033 |
tttttctacaatttctcatgcaccatttggtttcgtccccacaagctatttttctaacaaccattgtttttcctgggtgaatgtcaatgggtaaaaaaat |
27969132 |
T |
|
| Q |
323 |
ataatatgtcagtcagattgacggaaagggcaattccatctaaactgacaatacatatcgattcacttcatggaagaaaaaatatctttttaacctttg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27969133 |
ataatatgtcagtcagattgacggaaagggcaattccatctaaactgacaatacatatcgattcacttcatggaagaaaaaatatctttttaacctttg |
27969231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 23 - 409
Target Start/End: Original strand, 27980423 - 27980814
Alignment:
| Q |
23 |
gtccttcgttctaaagagctcctgcgctgcaaactccattcaatcatgattaccccaaatttcctttctcttgcagacttaaacttttaaaattgttgat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | |
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|
| T |
27980423 |
gtccttcgttctaaagagctcctgcgctgcaaactccattcaatcatgattaccccaaatttcctttctcttgaagacttaaacttttaaaagtgttgct |
27980522 |
T |
|
| Q |
123 |
ttgtttgacctttgaa---ttgtagtggttttgaatgtatactaggcttattaattgaaatccataattgttt-gtggtggtaaataattgataacagat |
218 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
27980523 |
ttgtttgacctttgaaactttgtagcggttttgaatgtatactaggcttattaattgaaatccataattgtttggtggtggtaaataattgataagagat |
27980622 |
T |
|
| Q |
219 |
tcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttannnnnnnaacaaccattgtttttcctgggtgaatgtcaatgggtnnnn |
318 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
27980623 |
tcaatttttctacactttctcattcaccatttggtttcgtccccacaagctagttttctaacaaccattgtttttcctaggtgaatgtcaatggataaaa |
27980722 |
T |
|
| Q |
319 |
nnntataat-atgtcagtcagattgacggaaagggcaattccatctaaactgacaatacatatcgattcacttcatggaagaaaaaatatct |
409 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
27980723 |
agatataataatgtatgtcagattgacggaaagggcaatttcatctaaattggcaatacatatcgattcactccatggaagaaaaaatatct |
27980814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 23 - 409
Target Start/End: Original strand, 28037725 - 28038116
Alignment:
| Q |
23 |
gtccttcgttctaaagagctcctgcgctgcaaactccattcaatcatgattaccccaaatttcctttctcttgcagacttaaacttttaaaattgttgat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | |
|
|
| T |
28037725 |
gtccttcgttctaaagagctcctgcgctgcaaactccattcaatcatgattaccccaaatttcctttctcttgaagacttaaacttttaaaagtgttgct |
28037824 |
T |
|
| Q |
123 |
ttgtttgacctttgaa---ttgtagtggttttgaatgtatactaggcttattaattgaaatccataattgttt-gtggtggtaaataattgataacagat |
218 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
28037825 |
ttgtttgacctttgaaactttgtagcggttttgaatgtatactaggcttattaattgaaatccataattgtttggtggtggtaaataattgataagagat |
28037924 |
T |
|
| Q |
219 |
tcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttannnnnnnaacaaccattgtttttcctgggtgaatgtcaatgggtnnnn |
318 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
28037925 |
tcaatttttctacactttctcattcaccatttggtttcgtccccacaagctagttttctaacaaccattgtttttcctaggtgaatgtcaatggataaaa |
28038024 |
T |
|
| Q |
319 |
nnntataat-atgtcagtcagattgacggaaagggcaattccatctaaactgacaatacatatcgattcacttcatggaagaaaaaatatct |
409 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28038025 |
agatataataatgtatgtcagattgacggaaagggcaatttcatctaaattggcaatacatatcgattcactccatggaagaaaaaatatct |
28038116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 89 - 417
Target Start/End: Original strand, 27886906 - 27887240
Alignment:
| Q |
89 |
tctcttgcagacttaaacttttaaaattgttgatttgtttgacctttgaa---ttgtagtggttttgaatgtatactaggcttattaattgaaatccata |
185 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27886906 |
tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttgaaactttgtagtggttttgaatgtatactaggcttattaattgaaatccaca |
27887005 |
T |
|
| Q |
186 |
attgtttgtggtggt---aaataattgataacagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttannnnnnnaacaa |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27887006 |
attgtttgtggtggtggtaaataattgataacagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttatttttttaacaa |
27887105 |
T |
|
| Q |
283 |
ccattgtttttcctgggtgaatgtcaatgggtnnnnnnntataatatgtcagtcagattgacggaaagggcaattccatctaaactgacaatacatatcg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |
|
|
| T |
27887106 |
ccattgtttttcctgggtgaatgtcaatgggtaaaaaattataatatgtcagtcagattgacggaaatggcaattccatctaaattgacaatacatattg |
27887205 |
T |
|
| Q |
383 |
attcacttcatggaagaaaaaatatctttttaacc |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27887206 |
attcacttcatggaagaaaaaatatatttttaacc |
27887240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 89 - 417
Target Start/End: Original strand, 27945564 - 27945898
Alignment:
| Q |
89 |
tctcttgcagacttaaacttttaaaattgttgatttgtttgacctttgaa---ttgtagtggttttgaatgtatactaggcttattaattgaaatccata |
185 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27945564 |
tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttgaaactttgtagtggttttgaatgtatactaggcttattaattgaaatccaca |
27945663 |
T |
|
| Q |
186 |
attgtttgtggtggt---aaataattgataacagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttannnnnnnaacaa |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27945664 |
attgtttgtggtggtggtaaataattgataacagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttatttttttaacaa |
27945763 |
T |
|
| Q |
283 |
ccattgtttttcctgggtgaatgtcaatgggtnnnnnnntataatatgtcagtcagattgacggaaagggcaattccatctaaactgacaatacatatcg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |
|
|
| T |
27945764 |
ccattgtttttcctgggtgaatgtcaatgggtaaaaaattataatatgtcagtcagattgacggaaatggcaattccatctaaattgacaatacatattg |
27945863 |
T |
|
| Q |
383 |
attcacttcatggaagaaaaaatatctttttaacc |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27945864 |
attcacttcatggaagaaaaaatatatttttaacc |
27945898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 89 - 417
Target Start/End: Original strand, 28025807 - 28026141
Alignment:
| Q |
89 |
tctcttgcagacttaaacttttaaaattgttgatttgtttgacctttgaa---ttgtagtggttttgaatgtatactaggcttattaattgaaatccata |
185 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28025807 |
tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttgaaactttgtagtggttttgaatgtatactaggcttattaattgaaatccaca |
28025906 |
T |
|
| Q |
186 |
attgtttgtggtggt---aaataattgataacagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttannnnnnnaacaa |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28025907 |
attgtttgtggtggtggtaaataattgataacagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttatttttttaacaa |
28026006 |
T |
|
| Q |
283 |
ccattgtttttcctgggtgaatgtcaatgggtnnnnnnntataatatgtcagtcagattgacggaaagggcaattccatctaaactgacaatacatatcg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |
|
|
| T |
28026007 |
ccattgtttttcctgggtgaatgtcaatgggtaaaaaattataatatgtcagtcagattgacggaaatggcaattccatctaaattgacaatacatattg |
28026106 |
T |
|
| Q |
383 |
attcacttcatggaagaaaaaatatctttttaacc |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28026107 |
attcacttcatggaagaaaaaatatatttttaacc |
28026141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 16895583 - 16895666
Alignment:
| Q |
49 |
ctgcaaactccattcaatcatgattaccccaaatttcctttctcttgcagacttaaacttttaaaattgttgatttgtttgacc |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
16895583 |
ctgcaaactccattcaatcatgattaccccacatcttctttctcttgataacttaaacttttaaaatggtttatttctttgacc |
16895666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 27873590 - 27873631
Alignment:
| Q |
23 |
gtccttcgttctaaagagctcctgcgctgcaaactccattca |
64 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
27873590 |
gtccttcgttctaaagagctcctacggtgcaaactccattca |
27873631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 15809443 - 15809360
Alignment:
| Q |
49 |
ctgcaaactccattcaatcatgattaccccaaatttcctttctcttgcagacttaaacttttaaaattgttgatttgtttgacc |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
15809443 |
ctgcaaactccattcaatcatgattaccccacatcttctttctcttgataacttaaacttttaaaatggtttatttctttgacc |
15809360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 54431157 - 54431211
Alignment:
| Q |
23 |
gtccttcgttctaaagagctcctgcgctgcaaactccattcaatcatgattaccc |
77 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
54431157 |
gtccttcgttctaaagagctcctgcactgcaaactccattcaatcatggttaccc |
54431211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 54431294 - 54431384
Alignment:
| Q |
278 |
aacaaccattgtttttcctgggtgaatgtcaatgggtnnnnnnntataata-tgtcagtcagattgacggaaagggcaattccatctaaact |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
54431294 |
aacaaccattgtttttcctgggtgaatgtcaatgggt-aaaaaatagaatactgtctgtcagattgataaaaagggcaattccatctaaact |
54431384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 52401416 - 52401446
Alignment:
| Q |
49 |
ctgcaaactccattcaatcatgattacccca |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52401416 |
ctgcaaactccattcaatcatgattacccca |
52401446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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