View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_low_10 (Length: 413)
Name: NF18335_low_10
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 43 - 397
Target Start/End: Complemental strand, 7418806 - 7418449
Alignment:
| Q |
43 |
tttttactcttttggtgttggaagttcgagaagaaacgatgacaacaacaacaac---gacaacgtttctgtttcattttctgatgaatcaacaagattt |
139 |
Q |
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| T |
7418806 |
tttttactcttttggtgttggaagttcgagaagaaacgacgacaacaacaacaacaacgacaacgtttctgtttcattttctgatgaatcaacaagattt |
7418707 |
T |
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| Q |
140 |
ggtttaacagttatgaggtcttcaagtggtggtttaggtggtggtggaatgaactgtcaagattgtggtaaccaagctaagaaagattgtccacatctta |
239 |
Q |
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| T |
7418706 |
ggtttaacagttatgaggtcttcaagtggtggtttaggtggtggtggaatgaactgtcaagattgtggtaaccaagctaagaaagattgtccacatctta |
7418607 |
T |
|
| Q |
240 |
gatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaagtacttgggttccagctgctaaacgccgcgaacggcagcaacaact |
339 |
Q |
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| T |
7418606 |
gatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaagtacttgggttccagctgctaaacgccgcgaacggcagcaacaact |
7418507 |
T |
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| Q |
340 |
cacgtcgttgcagcaacaaaatcagcagcagcaacaacagtttcactcatcaagaaga |
397 |
Q |
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| T |
7418506 |
cacgtcgttgcagcaacaaaatcagcagcagcaacaacagtttcactcatcaagaaga |
7418449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 336
Target Start/End: Complemental strand, 52767712 - 52767556
Alignment:
| Q |
180 |
gtggtggaatgaactgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtca |
279 |
Q |
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| T |
52767712 |
gtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcagtgtca |
52767613 |
T |
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| Q |
280 |
aactcatgtgaaaagtacttgggttccagctgctaaacgccgcgaacggcagcaaca |
336 |
Q |
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| T |
52767612 |
aacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
52767556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 194 - 336
Target Start/End: Original strand, 32482966 - 32483108
Alignment:
| Q |
194 |
tgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaa |
293 |
Q |
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| T |
32482966 |
tgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggttttcagtgtcaaactcatgttaaaa |
32483065 |
T |
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| Q |
294 |
gtacttgggttccagctgctaaacgccgcgaacggcagcaaca |
336 |
Q |
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| T |
32483066 |
gcacttgggttcctgcttctagacgccgtgaacgtcaacaaca |
32483108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 8101882 - 8102002
Alignment:
| Q |
194 |
tgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaa |
293 |
Q |
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|||||||||||||| || |||||||||||||||||||| ||| | ||||||||||||||||| |||||| |||| ||| | |||||||||||||| || | |
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| T |
8101882 |
tgtcaagattgtgggaatcaagctaagaaagattgtcctcatatgagatgtagaacttgttgtaagagtagaggttttgattgtcaaactcatgttaaga |
8101981 |
T |
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| Q |
294 |
gtacttgggttccagctgcta |
314 |
Q |
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| T |
8101982 |
gtacttgggttcctgctgcta |
8102002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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