View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_low_11 (Length: 409)
Name: NF18335_low_11
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 32250957 - 32251349
Alignment:
| Q |
1 |
atacttgaaaatactggactcaccggatgtacatagatgtataaaataaaattcaaaaactcaatttctaacataaagacctttaaaaacacatgataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250957 |
atacttgaaaatactggactcaccggatgtacatagatgtataaaataaaattcaaaaactcaatttctaacataaagacctttaaaaacacatgataat |
32251056 |
T |
|
| Q |
101 |
ccaaaatttccatgtcaacatttttgtgtcttttctgttggtactaataatcttgcagagcttctacgcgtagagtttgctgcttctcctgttgttttaa |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |||| |
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| T |
32251057 |
ccaaaatttccatgtctacatttttgtgtcttttctgttggtactaataatctagcagagcttctacgtgtagtgtttgctgcttctcctgttgtattaa |
32251156 |
T |
|
| Q |
201 |
tctatttgcaactgtatcaggattaatctcattgcaggggtagcctctcgtttcaaaattgagaacaagccaaaagttcgaagactactatttcgaaaaa |
300 |
Q |
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| T |
32251157 |
tctatttgcaactgtatcaggattaatctcatagcaggggtagcctctcgtttcaaaattgagaataagccaaaagttcgaagactactatttcgaaaaa |
32251256 |
T |
|
| Q |
301 |
gattttcaaaaatcaacgtctagggttattcgaaagtccaagttacacaacttctataaacttacatataaagtgtgttcaagaagtcttttg |
393 |
Q |
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| T |
32251257 |
gattttcaaaaatcaacgtctagggttattcgaaagtccaagttacacaacttctataaacttacatatcaagtgtgttcaagaagtcttttg |
32251349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 261 - 393
Target Start/End: Original strand, 32246137 - 32246266
Alignment:
| Q |
261 |
gagaacaagccaaaagttcgaagactactatttcgaaaaagattttcaaaaatcaacgtctagggttattcgaaagtccaagttacacaacttctataaa |
360 |
Q |
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| T |
32246137 |
gagaacaagccagaagttcgaagactgctatttcgaa---gattttcaaaaatcaacgtctagggttattcgaaagtccaagttacacaacttctataaa |
32246233 |
T |
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| Q |
361 |
cttacatataaagtgtgttcaagaagtcttttg |
393 |
Q |
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||| ||||| || | |||||| ||||||||||| |
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| T |
32246234 |
ctttcatatcaactatgttcaggaagtcttttg |
32246266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 32245228 - 32245353
Alignment:
| Q |
15 |
tggactcaccggatgtacatagatgtataaaataaaattcaaaaactcaatttctaacata--aagacctttaaaaacacatgataatcc-aaaatttcc |
111 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
32245228 |
tggactcaccagatgtacatagatgtataaaataaaattcaaaaactcaatttctaacatacctttacctttaaaaacacatgataatccaaaaatttcc |
32245327 |
T |
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| Q |
112 |
atgtcaacatttttgtgtcttttctg |
137 |
Q |
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||||| ||||||||||||| |||||| |
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| T |
32245328 |
atgtctacatttttgtgtcctttctg |
32245353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 32245445 - 32245496
Alignment:
| Q |
181 |
tgcttctcctgttgttttaatctatttgcaactgtatcaggattaatctcat |
232 |
Q |
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| T |
32245445 |
tgcttctcctgttgttttaatctatttgcaactgtatcaggactaaactcat |
32245496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 32256441 - 32256472
Alignment:
| Q |
225 |
aatctcattgcaggggtagcctctcgtttcaa |
256 |
Q |
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| T |
32256441 |
aatctcattgcaggggtagcctctcgtttcaa |
32256472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 32246032 - 32246066
Alignment:
| Q |
225 |
aatctcattgcaggggtagcctctcgtttcaaaat |
259 |
Q |
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| T |
32246032 |
aatctcattgcaggggtagcctctcgtttgaaaat |
32246066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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