View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_low_13 (Length: 383)
Name: NF18335_low_13
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 4929441 - 4929299
Alignment:
| Q |
9 |
gagatgaagatagaagagaatgagaggtattggatggatgcggatttttgcaatggtgttcaaaaatcaccacttaactaacattatgggggatatgaac |
108 |
Q |
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| T |
4929441 |
gagatgaagatagaagagaatgaattgtgttggccggatgcggatttttacaatggtgttcaaaaatcaccacttaactaacattatgggggatatgagc |
4929342 |
T |
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| Q |
109 |
cttttaacaaagagtcttactaatgaatattaatcttagtgta |
151 |
Q |
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| T |
4929341 |
cttttaacaaagagtcttgctaatcaatattaatcttagtgta |
4929299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 247 - 364
Target Start/End: Complemental strand, 4929204 - 4929087
Alignment:
| Q |
247 |
cataccatttaagattcttaaaaaattaccaaggacattcgttagcatttaggtagattaaaataagtgtgttattggaacacaaatatgagcatagtat |
346 |
Q |
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||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4929204 |
cataccatttaagattcttaaaaaatttcctgggacattcgttaacatttaggtagattaaaataagtgtgttattggaacacaaatatgagcattgtat |
4929105 |
T |
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| Q |
347 |
gtttgttaactgcattta |
364 |
Q |
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| T |
4929104 |
gtttgttaattgtattta |
4929087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 4946896 - 4946788
Alignment:
| Q |
43 |
tggatgcggatttttgcaatggtgttcaaaaatcaccacttaactaacattatgggggatatgaaccttttaacaaagagtcttactaatgaatattaat |
142 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
4946896 |
tggatgctgatttttgcaatgctgttcaaaaatcaccacttatcaaacattatgggggatatgaaccttttaacaaagaatcttgctaacgaatattaat |
4946797 |
T |
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| Q |
143 |
cttagtgta |
151 |
Q |
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| T |
4946796 |
cttagtgta |
4946788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 4946483 - 4946391
Alignment:
| Q |
247 |
cataccatttaagattcttaaaaaattaccaaggacattcgttagcatttaggtagattaaaat--aagtgtgttattggaacacaaatatga |
337 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4946483 |
cataccatttaagattcttaaaaaatttccggggacattcgttagcatttaggtagattaaaataaaagtgtgttattggaacacaaatatga |
4946391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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