View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_low_14 (Length: 366)
Name: NF18335_low_14
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 51122046 - 51121699
Alignment:
| Q |
19 |
gcaccatatactgataagatgaaatgacataccagacaacatcaaggaaagatttacttgcaaagtgaaaaggcaagacatttaaaacacaatcactata |
118 |
Q |
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| T |
51122046 |
gcaccatatactgataagatgaaatgacataccagacaacatcaaggaaagatttacctgcaaagtgaaaaggcaagacatttaaaacacaatcactata |
51121947 |
T |
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| Q |
119 |
caaaggagaaaacattctctaaatttttcctattctaatcatgaaaaatgannnnnnnnnnnnnnnnnnnnnnngaccttcttggccactcaaagtttat |
218 |
Q |
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| T |
51121946 |
caaattagaaaacattctctaaatttttcctattctaatcatgaaaaatgatttttctatttttattgttttttgaccttcttggccactaaaagtttat |
51121847 |
T |
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| Q |
219 |
ttcacttataaccacatacgtttagttacaagtgaccnnnnnnncttttcaaatttctaatgattgatgcaagtgaaattttttatgtaggagaatatgt |
318 |
Q |
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| T |
51121846 |
ttcacttataaccacatatgtttagttacaagtgacctttttttcttttcaaatttctaatgattgatgcaagtgaaattttttatgtaggagaatatgt |
51121747 |
T |
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| Q |
319 |
atattcccattccattgtttggtagattttatcatatatagaagaata |
366 |
Q |
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| T |
51121746 |
atatttccattccattgtttggtagatttgatcatatgtagaagaata |
51121699 |
T |
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 45246042 - 45245966
Alignment:
| Q |
64 |
ggaaagatttacttgcaaagtgaaaaggcaagacatttaaaacacaatcactatacaaaggagaaaacattctctaa |
140 |
Q |
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| T |
45246042 |
ggaaacatatacctgcagagtgaaaaggcaagacatttaaaacacaatcaatatacaaaagagaaaacattctctaa |
45245966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 48886017 - 48885966
Alignment:
| Q |
83 |
gtgaaaaggcaagacatttaaaacacaatcactatacaaaggagaaaacatt |
134 |
Q |
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| T |
48886017 |
gtgaaaaggaaagacatttaaaagacaatcactatacaaaggagaaaacatt |
48885966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 39016681 - 39016718
Alignment:
| Q |
29 |
ctgataagatgaaatgacataccagacaacatcaagga |
66 |
Q |
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| T |
39016681 |
ctgataagatgaaatgacataccagacaacatcaagga |
39016718 |
T |
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