View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_low_17 (Length: 325)
Name: NF18335_low_17
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 46763362 - 46763661
Alignment:
| Q |
11 |
cagagaagtttagcaggagcacgagtcaggttaggcgaggaagaatgaatcttgaccatcctcgaattatcgatgtgcagaactataggtatcctacttc |
110 |
Q |
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| T |
46763362 |
cagagaagtttagcaggagcacgagtcaggttaggcgaggaagaatgaatcttgaccatcctcgaattatcgatgtgcagaactataggtatcctacttc |
46763461 |
T |
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| Q |
111 |
aattttaccaagaaaaataaaataaaaggctttgttctgtttctcatgaattgtgaacattgagcagcatttttgtagcaacatggaatgtagctggaag |
210 |
Q |
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| T |
46763462 |
aattttaccaagaaaaataaaataaaaggctttgttctgtttctcatgaattgtgaacattgagcagcatttttgtagcaacatggaatgtagctggaag |
46763561 |
T |
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| Q |
211 |
atccccaccaagtaatttgagtgtagatgattggcttcattcctcacctccagctgacatttatgttcttgggtaagaattgttgcttgacgacatttat |
310 |
Q |
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| T |
46763562 |
atccccaccaagtaatttgagtgtagatgattggcttcattcctcacctccagctgacatttatgttcttgggtaagaattgttgcttgacgacatttat |
46763661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 31829319 - 31829412
Alignment:
| Q |
194 |
tggaatgtagctggaagatccccaccaagtaatttgagtgtagatgattggcttcattcctcacctccagctgacatttatgttcttgggtaag |
287 |
Q |
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| T |
31829319 |
tggaatgtagctggacgatctcctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttctagggtaag |
31829412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 1083735 - 1083826
Alignment:
| Q |
11 |
cagagaagtttagcaggagcacgagtcaggttaggcgaggaagaatgaatcttgaccatcctcgaattatcgatgtgcagaactataggtat |
102 |
Q |
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| T |
1083735 |
cagagaaatttagcaggaactcgagtcaggttaggcgagcgaggatgaaccttgaccatcctagaattatagatgtccataactataggtat |
1083826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 1083899 - 1084013
Alignment:
| Q |
171 |
tgagcagcatttttgtagcaacatggaatgtagctggaagatccccaccaagtaatttgagtgtagatgattggcttcattcctcacctccagctgacat |
270 |
Q |
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| T |
1083899 |
tgagcagcatttttgttggtacatggaatgtggccggaagatccccgccgagtaatttgagcataaacgattggcttcacgcctcaccgcctgcagatat |
1083998 |
T |
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| Q |
271 |
ttatgttcttgggta |
285 |
Q |
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||||||||||||||| |
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| T |
1083999 |
ttatgttcttgggta |
1084013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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