View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18335_low_2 (Length: 571)

Name: NF18335_low_2
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18335_low_2
NF18335_low_2
[»] chr8 (2 HSPs)
chr8 (52-557)||(33823785-33824290)
chr8 (79-182)||(28437310-28437413)
[»] chr5 (2 HSPs)
chr5 (78-235)||(13481015-13481172)
chr5 (101-158)||(18198182-18198239)
[»] chr4 (3 HSPs)
chr4 (100-212)||(23663582-23663694)
chr4 (79-125)||(35721705-35721751)
chr4 (100-190)||(45763667-45763757)
[»] chr7 (1 HSPs)
chr7 (79-218)||(8132030-8132169)
[»] chr2 (4 HSPs)
chr2 (103-206)||(41335315-41335418)
chr2 (79-157)||(3591840-3591918)
chr2 (78-128)||(3945955-3946005)
chr2 (100-185)||(24563321-24563406)
[»] chr1 (1 HSPs)
chr1 (100-130)||(34645998-34646028)


Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 52 - 557
Target Start/End: Original strand, 33823785 - 33824290
Alignment:
Q  52 tcatcagaaaaccaacaacatctaaggtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823785 tcatcagaaaaccaacaacatctaaggtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatt 33823884  T
Q  152 tctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacgttccaattggaggtggctgccggaaaaacaagagcatcggtgcctcaaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823885 tctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacgttccaattggaggtggctgccggaaaaacaagagcatcggtgcctcaaa 33823984  T
Q  252 caacacggcaaaaatagctacaaacaagatgaaaacagtttcttcttcggagtttattggaaggtcaacaagtggtcaagggtttgatctcgaacacgtt 351  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823985 caacgcggcaaaaatagctacaaacaagatgaaaacagtttcttcttcggagtttattggaaggtcaacaagtggtcaagggtttgatctcgaacacgtt 33824084  T
Q  352 gttccaccacaaagtcaaatcctctggggttctcctcaaaattctcatatactttctttgctaagatctagtcaaaaccaaaaccctaaccctaatcatg 451  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824085 gttccaccacaaagtcaaatcctatggggttctcctcaaaattctcatatactttctttgctaagatctagtcaaaaccaaaaccctaaccctaatcatg 33824184  T
Q  452 ttaaggaagaaggcaataacttcatagggtcccatgtttctcacatgatgagttctcagccgttgatttcgtcaaatggttatgatggtgttggacatgt 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824185 ttaaggaagaaggcaataacttcatagggtcccatgtttctcacatgatgagttctcagccgttgatttcgtcaaatggttatgatggtgttggacatgt 33824284  T
Q  552 tttatg 557  Q
    ||||||    
T  33824285 tttatg 33824290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 28437310 - 28437413
Alignment:
Q  79 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgga 178  Q
    ||||||||||| || ||  ||||||||||||| ||||||||||||||||| |  |||||||| ||  | ||||||||||| |||||| |  | |||||||    
T  28437310 tgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattgga 28437409  T
Q  179 caaa 182  Q
    ||||    
T  28437410 caaa 28437413  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 13481015 - 13481172
Alignment:
Q  78 gtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgg 177  Q
    |||||||||||| |||||| | ||||||||||| || |||||||||||||||| | | || || ||  | ||||||||||| |||||  |  | ||||||    
T  13481015 gtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattgg 13481114  T
Q  178 acaaaaggaggtgctttaagaaacgttccaattggaggtggctgccggaaaaacaaga 235  Q
    |||||||| || |||||| | ||||||||||| || ||||| ||  | ||||||||||    
T  13481115 acaaaaggtggagctttacgcaacgttccaatcggtggtggatgtagaaaaaacaaga 13481172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 18198182 - 18198239
Alignment:
Q  101 acacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaa 158  Q
    ||||||||||||| |||||||||||||| ||| |||  |||||||| || ||||||||    
T  18198182 acacaaaattttgctactacaacaactacaacgtcaaacagcctcgacacttctgcaa 18198239  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 23663582 - 23663694
Alignment:
Q  100 aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaa 199  Q
    ||||| |||||||| |||| ||||||||| | ||||||||| ||||| || ||||||||||||||  | ||||||||||||| ||| |||||  | ||||    
T  23663582 aacactaaattttgctacttcaacaactacagcctcactcaacctcgtcacttctgcaagacatgtaggcgttattggacaagagggggtgcacttagaa 23663681  T
Q  200 acgttccaattgg 212  Q
    | |||||| ||||    
T  23663682 atgttccagttgg 23663694  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 35721705 - 35721751
Alignment:
Q  79 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaa 125  Q
    ||||||||||| || ||| |||||||||| |||||||||||||||||    
T  35721705 tgtccaagatgtgattcaacaaacacaaagttttgttactacaacaa 35721751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 45763757 - 45763667
Alignment:
Q  100 aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtg 190  Q
    ||||| ||||| ||||||||||| ||||| |||||| | |||||||| || |||||||| |  ||||| ||||| ||||| ||||| ||||    
T  45763757 aacaccaaattctgttactacaataactacaacctctcccagcctcgtcacttctgcaaaaactgccgacgttactggactaaaggcggtg 45763667  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 8132169 - 8132030
Alignment:
Q  79 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgga 178  Q
    ||||||||||| || ||| |||||||||| || || |||||||||||||| || ||  | || || |||||||| ||||| || || |||||||||||||    
T  8132169 tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattgga 8132070  T
Q  179 caaaaggaggtgctttaagaaacgttccaattggaggtgg 218  Q
    | ||||| |||||  |  ||||||||||  ||||||||||    
T  8132069 ctaaaggtggtgcacttcgaaacgttcctgttggaggtgg 8132030  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 41335315 - 41335418
Alignment:
Q  103 acaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacg 202  Q
    |||||||||||||||||||||||||||||| |  |||| ||  | || || |||||||||||  | ||||||||||||| ||| ||||| |||||||| |    
T  41335315 acaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggggtgcattaagaaatg 41335414  T
Q  203 ttcc 206  Q
    ||||    
T  41335415 ttcc 41335418  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 3591840 - 3591918
Alignment:
Q  79 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgca 157  Q
    ||||||||||| |||||  |||| || |||||||||||||||||||||||||||    |||| ||||||||||||||||    
T  3591840 tgtccaagatgtgactctacaaataccaaattttgttactacaacaactataacaagtctcaacctcgccatttctgca 3591918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 3946005 - 3945955
Alignment:
Q  78 gtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaacta 128  Q
    ||||||| | || ||||||||||||||||| ||||||||||||||||||||    
T  3946005 gtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaacta 3945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 24563321 - 24563406
Alignment:
Q  100 aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaagg 185  Q
    ||||| ||||| || |||||||||||||| |||||| |||||||||| |||||||| || |  |||||||| || ||||| |||||    
T  24563321 aacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactgccgtcgctactggaccaaagg 24563406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 34645998 - 34646028
Alignment:
Q  100 aacacaaaattttgttactacaacaactata 130  Q
    |||||||||||||||||||||||||||||||    
T  34645998 aacacaaaattttgttactacaacaactata 34646028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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