View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_low_25 (Length: 247)
Name: NF18335_low_25
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1965228 - 1965001
Alignment:
| Q |
1 |
caactgaagacaaccataatggccatccagaatcaacatattgttctcctgaaaaatgttgcacactgagtattctactcattattggctttctttcatc |
100 |
Q |
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| T |
1965228 |
caactgaagacaaccataatggccatccagaatcaacatattgttctcctgaaaaatgttgcacactgagtattctactcattactggctttctttcatc |
1965129 |
T |
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| Q |
101 |
tacaccagaagttaatgtcatacatctttgatgctggctcttcttgttagcagcatctaattgaatgattttctcttctgctcttctaaacacttgtgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1965128 |
tacaccagaagttaatgtcatacatctttgatgctggc---tcttgttagcagcatctaattgaatgattttctcttctgctcttctaaacacttgtgac |
1965032 |
T |
|
| Q |
201 |
gacgccttagccaaacgaggtgttgaattac |
231 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
1965031 |
gacgccttagcaaaacgaggtgttgaattac |
1965001 |
T |
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