View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18335_low_27 (Length: 247)
Name: NF18335_low_27
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 13020828 - 13020869
Alignment:
| Q |
101 |
gggagaatcaaacctgtttatttcctagtcttaatcaaaaga |
142 |
Q |
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| T |
13020828 |
gggagaatcaaacctgtttatttcctagtcttattcaaaaga |
13020869 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 31070716 - 31070680
Alignment:
| Q |
13 |
attctaagtatcgtaataacatcatgcgacaagatta |
49 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
31070716 |
attcaaagtatcgtaataacatcatgcgacaagatta |
31070680 |
T |
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