View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18335_low_30 (Length: 221)

Name: NF18335_low_30
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18335_low_30
NF18335_low_30
[»] chr2 (7 HSPs)
chr2 (14-221)||(43227731-43227939)
chr2 (17-221)||(41650220-41650425)
chr2 (164-221)||(43224081-43224138)
chr2 (166-221)||(41654760-41654815)
chr2 (166-221)||(43213348-43213403)
chr2 (164-221)||(43206372-43206429)
chr2 (17-98)||(35021103-35021184)
[»] chr4 (1 HSPs)
chr4 (41-100)||(43365914-43365973)
[»] chr5 (1 HSPs)
chr5 (41-98)||(13639520-13639577)
[»] chr3 (1 HSPs)
chr3 (54-98)||(25189514-25189558)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 43227731 - 43227939
Alignment:
Q  14 atagtggcatatgatctgatgattgagaaatataaacctcgataaaattgttagaaaattctcatgaaaacttcatttaaaacatgtgatatagaaaacc 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43227731 atagtggtatatgatctgatgattgagaaatataaacctcgataaaattgttagaaaattctcttgaaaacttcatttaaaacatgtgatatagaaaacc 43227830  T
Q  114 aagataaaatccacagctgaaaactaaaacactcaagg-nnnnnnnnntgcagacctgcatgagaagagcatccatgtcagctctcagagctacaaaagg 212  Q
    ||||||||||||||| ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  43227831 aagataaaatccacaactgaaaactaaaacactcaaggaaaaaaaaaatgcagacctgcatgagaagagcatccatgtcagctctaagagcaacaaaagg 43227930  T
Q  213 aggaagacc 221  Q
    |||||||||    
T  43227931 aggaagacc 43227939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 41650425 - 41650220
Alignment:
Q  17 gtggcatatgatctgatgattgagaaatataaacctcgataaaattgttagaaaattctcatgaaaacttcatttaaaacatgtgatatagaaaaccaag 116  Q
    |||| ||||||||||||||||||| ||||| ||| || ||||| |||||||||||||||| ||||||||||||||||||||||| | ||  |||||||||    
T  41650425 gtggtatatgatctgatgattgagtaatatgaacgtcaataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaag 41650326  T
Q  117 at-aaaatccacagctgaaaactaaaacactcaaggnnnnnnnnntgcagacctgcatgagaagagcatccatgtcagctctcagagctacaaaaggagg 215  Q
    || |||| ||| |  || |||| |||||||||| |            || ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  41650325 ataaaaacccataattggaaaccaaaacactcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggagg 41650226  T
Q  216 aagacc 221  Q
    ||||||    
T  41650225 aagacc 41650220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 43224081 - 43224138
Alignment:
Q  164 agacctgcatgagaagagcatccatgtcagctctcagagctacaaaaggaggaagacc 221  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  43224081 agacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagacc 43224138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 41654815 - 41654760
Alignment:
Q  166 acctgcatgagaagagcatccatgtcagctctcagagctacaaaaggaggaagacc 221  Q
    |||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||    
T  41654815 acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagacc 41654760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 43213348 - 43213403
Alignment:
Q  166 acctgcatgagaagagcatccatgtcagctctcagagctacaaaaggaggaagacc 221  Q
    |||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||    
T  43213348 acctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagacc 43213403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 43206372 - 43206429
Alignment:
Q  164 agacctgcatgagaagagcatccatgtcagctctcagagctacaaaaggaggaagacc 221  Q
    ||||||| || |||||||||||||| |||||||| ||||| |||||||||||||||||    
T  43206372 agacctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagacc 43206429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 35021103 - 35021184
Alignment:
Q  17 gtggcatatgatctgatgattgagaaatataaacctcgataaaattgttagaaaattctcatgaaaacttcatttaaaacat 98  Q
    |||| ||||||||||| ||| || ||| || ||| ||||||||||||  | |||||| || |||||||||||||||||||||    
T  35021103 gtggaatatgatctgaagatagaaaaagatcaacatcgataaaattgcgacaaaattttcttgaaaacttcatttaaaacat 35021184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 43365973 - 43365914
Alignment:
Q  41 aaatataaacctcgataaaattgttagaaaattctcatgaaaacttcatttaaaacatgt 100  Q
    |||||||||| ||||| |||| || ||||||||| | | |||||||||||||||||||||    
T  43365973 aaatataaacatcgatgaaatcgtaagaaaattcccttaaaaacttcatttaaaacatgt 43365914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 13639520 - 13639577
Alignment:
Q  41 aaatataaacctcgataaaattgttagaaaattctcatgaaaacttcatttaaaacat 98  Q
    |||||| ||| ||||||||||||| | ||||| ||| | |||||||||||||||||||    
T  13639520 aaatatcaacatcgataaaattgtaacaaaatgctcttaaaaacttcatttaaaacat 13639577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 25189558 - 25189514
Alignment:
Q  54 gataaaattgttagaaaattctcatgaaaacttcatttaaaacat 98  Q
    ||||||||||| |  |||||||| |||||||||||||||||||||    
T  25189558 gataaaattgtaacgaaattctcttgaaaacttcatttaaaacat 25189514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University