View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18335_low_4 (Length: 467)

Name: NF18335_low_4
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18335_low_4
NF18335_low_4
[»] chr3 (4 HSPs)
chr3 (20-269)||(1639410-1639659)
chr3 (410-467)||(1639799-1639856)
chr3 (34-123)||(7634451-7634541)
chr3 (70-118)||(43613617-43613665)
[»] chr1 (3 HSPs)
chr1 (20-124)||(21761156-21761260)
chr1 (20-124)||(15470880-15470984)
chr1 (34-123)||(26088618-26088707)
[»] chr2 (3 HSPs)
chr2 (68-124)||(5726842-5726898)
chr2 (34-124)||(11804919-11805009)
chr2 (69-124)||(34233636-34233691)
[»] scaffold0027 (1 HSPs)
scaffold0027 (35-125)||(36152-36242)
[»] chr5 (2 HSPs)
chr5 (36-124)||(15233750-15233838)
chr5 (20-120)||(23229507-23229606)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 1639410 - 1639659
Alignment:
Q  20 ttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcat 119  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||  ||||||||||||||||||||||||||||    
T  1639410 ttaactcacgctgatttaacacatgcgtgacttaactcacactgggaacatttttggaagtttagttggatctgagtaaaacttgttggaagaagagcat 1639509  T
Q  120 ttttcggcacaatatatggatgacacatcaatgacatctaagaggcttcatgttacctacaattaatgaataattttagcaaccatttggacattaagtg 219  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  1639510 tttttggcacaatatatggatgacacatcaatgacatctaagagggttcatgttacctacaattaatcaatatttttagcaaccatttggacattaagtg 1639609  T
Q  220 actgtgttcaagggccattttctaagacatattttaccaactttcattcc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1639610 actgtgttcaagggccattttctaagacatattttaccaactttcattcc 1639659  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 1639799 - 1639856
Alignment:
Q  410 tgctatttatcattcatttctcagtttttctcgagtccctcttttatccatctttctt 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1639799 tgctatttatcattcatttctcagtttttctcgagtccctcttttatgcatctttctt 1639856  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 7634451 - 7634541
Alignment:
Q  34 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaaga--agagcattttt 123  Q
    ||||||| |||||||||||||||||| ||||    ||||||||||||||| |||| |||||| |||||||||||| |||  |||||||||||    
T  7634451 tttaacatatgtgtgacttaactcacgctggaggtattttcggaagtttggttgg-agtgagaaaaacttgttgggagatcagagcattttt 7634541  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 43613665 - 43613617
Alignment:
Q  70 ttttcggaagtttgattggaagtgagtaaaacttgttggaagaagagca 118  Q
    |||||||||||||| ||| || |||| ||||| ||||||||||||||||    
T  43613665 ttttcggaagtttggttgaaaatgagcaaaacgtgttggaagaagagca 43613617  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 21761156 - 21761260
Alignment:
Q  20 ttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcat 119  Q
    ||||||||||||| ||||||||||| |||| ||||||||| |||||  ||||||  ||||||||  || ||||||  |||||||||||||||||||||||    
T  21761156 ttaactcacgctggtttaacacatgcgtgagttaactcacgctgggggcatttttagaagtttggctgtaagtgaacaaaacttgttggaagaagagcat 21761255  T
Q  120 ttttc 124  Q
    |||||    
T  21761256 ttttc 21761260  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 15470984 - 15470880
Alignment:
Q  20 ttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcat 119  Q
    ||||||||||||| ||||||||||| |||| ||||||||| || ||   ||||||| ||||||| |||| | | || |||||||||||| ||||||||||    
T  15470984 ttaactcacgctggtttaacacatgcgtgagttaactcacgctaggggtattttcgaaagtttggttgggaataagcaaaacttgttgggagaagagcat 15470885  T
Q  120 ttttc 124  Q
    |||||    
T  15470884 ttttc 15470880  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 26088707 - 26088618
Alignment:
Q  34 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcattttt 123  Q
    |||||||||||  ||| |||||||||||   |  ||||||||||||||||||||| | |||| |||||||||||| ||||||| ||||||    
T  26088707 tttaacacatgcatgagttaactcacaccatgggcattttcggaagtttgattgggaatgagcaaaacttgttgggagaagagtattttt 26088618  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 5726898 - 5726842
Alignment:
Q  68 cattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 124  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5726898 cattttcggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttc 5726842  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 11805009 - 11804919
Alignment:
Q  34 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 124  Q
    ||||| |||||||||| ||||||||| || ||   ||||||| ||||||| || | ||| ||||||||||| ||| |||||||||||||||    
T  11805009 tttaatacatgtgtgagttaactcacgctaggggtattttcgaaagtttggttaggagtaagtaaaacttgctgggagaagagcatttttc 11804919  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 34233636 - 34233691
Alignment:
Q  69 attttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 124  Q
    ||||| ||||||||| ||||||||||| ||||| || ||||||||||| |||||||    
T  34233636 attttgggaagtttggttggaagtgagcaaaacgtgatggaagaagagaatttttc 34233691  T

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Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 36242 - 36152
Alignment:
Q  35 ttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttcg 125  Q
    ||||||||||  ||| |||||||||||  ||  |||||||| |||||||||||| |||||  |||||||||||  ||||||||||||||||    
T  36242 ttaacacatgcttgagttaactcacaccagggtcattttcgaaagtttgattgggagtgaacaaaacttgttgagagaagagcatttttcg 36152  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 15233838 - 15233750
Alignment:
Q  36 taacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 124  Q
    ||||||||  |||||||||||||| ||| || ||||||||||||| |  |||| |||||| ||||  |  ||| |||||||||||||||    
T  15233838 taacacatacgtgacttaactcacgctgtgagcattttcggaagtgtagttgggagtgagcaaaatgtaatgggagaagagcatttttc 15233750  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 23229507 - 23229606
Alignment:
Q  20 ttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcat 119  Q
    ||||| ||||| || ||||||||||  ||| |||||||||||  | |||||||||||||||||| |||  | |||  ||||  |||||||||||||||||    
T  23229507 ttaacccacgcagaattaacacatgcatgagttaactcacacatg-aacattttcggaagtttggttgagaatgaacaaaatatgttggaagaagagcat 23229605  T

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