View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18335_low_8 (Length: 419)
Name: NF18335_low_8
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18335_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 42114145 - 42113745
Alignment:
| Q |
1 |
acagaaaaacaccaccaatgaaacgacgccgtaaatatcatcttcaggactccatagaacggtgaaggccaacgatacaacctgaagaggaagagccacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42114145 |
acagaaaaacaccaccaatgaaacgacgccgtaaatatcatcttcaggactccatagaacggtgaaggccaacgacacaacctgaagaggaagagccacc |
42114046 |
T |
|
| Q |
101 |
aaaacgacagaacccaatgcgtagattcgaatccttaatcctttgttaatcaccaatgataaaaccttccaacatgagaacaataaccatgcacaatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42114045 |
aaaacgacagaacccaatgcgtagattcgaatccttaatcctttgttaatcaccaatgataaaaccttccaacatgagaacaataaccatgcacaatatg |
42113946 |
T |
|
| Q |
201 |
cagcagcgaatgcggcgaacacaacgctgtttaagaacgggtaagcgcagagaacggtgtcgtcttctagaataacaaatgtttgtcgtaacaacgccgg |
300 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42113945 |
cagcagagaatgccgcgaacacaacgctgtttaagaacgggtaagcacagagaacggtgtcgtcttctagaataacaaatgtttgtcgtaacaacgccgg |
42113846 |
T |
|
| Q |
301 |
aacacgatgttccaatggattgaaatagacaagtaaaccttgaagaatacctaatggaagacacgtgctaaacacaaaggttacagcccaaccgtcgttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42113845 |
aacacgatgttccaatggattgaaatagacaagtaaaccttgaagaatacctaatggaagacacgtgctaaacacaaaggttacagcccaaccgtcgttt |
42113746 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
|
| |
|
|
| T |
42113745 |
g |
42113745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University