View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18335_low_9 (Length: 416)

Name: NF18335_low_9
Description: NF18335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18335_low_9
NF18335_low_9
[»] chr4 (5 HSPs)
chr4 (105-277)||(24599610-24599783)
chr4 (351-408)||(24599857-24599914)
chr4 (1-77)||(24599506-24599582)
chr4 (105-192)||(51970285-51970373)
chr4 (123-192)||(18902884-18902954)
[»] chr3 (3 HSPs)
chr3 (105-192)||(23210078-23210166)
chr3 (105-192)||(52689308-52689396)
chr3 (135-192)||(12277440-12277498)
[»] chr6 (2 HSPs)
chr6 (105-192)||(9578861-9578950)
chr6 (119-192)||(14744085-14744159)
[»] chr1 (3 HSPs)
chr1 (105-152)||(24536208-24536255)
chr1 (105-158)||(18524246-18524299)
chr1 (130-192)||(49382504-49382568)
[»] chr7 (1 HSPs)
chr7 (206-272)||(47129807-47129873)
[»] chr5 (2 HSPs)
chr5 (192-230)||(23282782-23282820)
chr5 (113-192)||(23282918-23282999)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 24599610 - 24599783
Alignment:
Q  105 gagctatctaattatagatgaatacatgaatatttcaatttgtttctactttctata-gggaattgatttaacctttttgtgtgaaactcataaatttaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  24599610 gagctatctaattatagatgaatacatgaatatttcaatttgtttctactttctatatgggaattgatttaatctttttgtgtgaaactcataaatttaa 24599709  T
Q  204 cgcacgatgtaagaatcatgaattttgagagtattatgtatgacaaataaaatttgaatggattatataggaat 277  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  24599710 cacacgatgtaagaatcatgaattttgagtgtattatgtatgacaaataaaatttgaatggattatgtaggaat 24599783  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 24599857 - 24599914
Alignment:
Q  351 ttattggtacccatgaaatgcatgcatatctcaatacttgcgggttatcagtataatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24599857 ttattggtacccatgaaatgcatgcatatctcaatacttgcggtttatcagtataatg 24599914  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 24599506 - 24599582
Alignment:
Q  1 tttctcttcctcttctcttttggtgcacccatannnnnnncttctcatttcttctgctgctacttcttcatagcatg 77  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||    
T  24599506 tttctcttcctcttctcttttggtgcacccatatttttttcttctcatttcttctgctgctacttcttcttagcatg 24599582  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 51970285 - 51970373
Alignment:
Q  105 gagctatctaattatagatgaatacatgaatatttcaatttgtttctactttctat-agggaattgatttaacctttttgtgtgaaact 192  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||||||||  |||||||  || ||||||||||| ||||| ||||||||||    
T  51970285 gagctttctaattttagatgaatacatgagtatatcaatttgtttcttatttctatgtggaaattgatttaatcttttggtgtgaaact 51970373  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 18902884 - 18902954
Alignment:
Q  123 tgaatacatgaatatttcaatttgtttctactttctat-agggaattgatttaacctttttgtgtgaaact 192  Q
    |||||||||||||||||||||||||||||| |||||||   ||| ||||||||| |||||||| |||||||    
T  18902884 tgaatacatgaatatttcaatttgtttctaatttctatgtaggagttgatttaatctttttgtttgaaact 18902954  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 23210166 - 23210078
Alignment:
Q  105 gagctatctaattatagatgaatacatgaatatttcaatttgtttctactttctat-agggaattgatttaacctttttgtgtgaaact 192  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||  |||||||||||||| ||||||||||||||||    
T  23210166 gagctttctaattttagatgaatacatgaatatttcaatttgtttttaatttctatgtgggaattgatttaatctttttgtgtgaaact 23210078  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 52689396 - 52689308
Alignment:
Q  105 gagctatctaattatagatgaatacatgaatatttcaatttgtttctactttctat-agggaattgatttaacctttttgtgtgaaact 192  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||| || |||||||  || |||||||||||  ||| |||||||||||    
T  52689396 gagctttctaattttagatgaatacatgaatattccaatttgtttttagtttctatgtggaaattgatttaatttttatgtgtgaaact 52689308  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 12277498 - 12277440
Alignment:
Q  135 tatttcaatttgtttctactttctatagg-gaattgatttaacctttttgtgtgaaact 192  Q
    ||||||||||||||| || |||||||  | |||||||||||||||||||||||||||||    
T  12277498 tatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaact 12277440  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 9578861 - 9578950
Alignment:
Q  105 gagctatctaattatagatgaatacatgaatatttcaattt-gtttctactttctata-gggaattgatttaacctttttgtgtgaaact 192  Q
    ||||| ||||||| ||||||||||||  ||||||||||||| ||||||| |||||||  |||||||||||||| ||||||||||||||||    
T  9578861 gagctttctaattttagatgaatacacaaatatttcaattttgtttctaatttctatgtgggaattgatttaatctttttgtgtgaaact 9578950  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 14744085 - 14744159
Alignment:
Q  119 tagatgaatacatgaatatttcaatttgtttctactttctat-agggaattgatttaacctttttgtgtgaaact 192  Q
    ||||||||||||||||||||||||||| |||||| |||||||  || ||||||||||| |||||||||| |||||    
T  14744085 tagatgaatacatgaatatttcaatttttttctaatttctatgtggaaattgatttaatctttttgtgtaaaact 14744159  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 24536255 - 24536208
Alignment:
Q  105 gagctatctaattatagatgaatacatgaatatttcaatttgtttcta 152  Q
    ||||| |||| || ||||||||||||||| ||||||||||||||||||    
T  24536255 gagctttctagttttagatgaatacatgagtatttcaatttgtttcta 24536208  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 18524299 - 18524246
Alignment:
Q  105 gagctatctaattatagatgaatacatgaatatttcaatttgtttctactttct 158  Q
    ||||| ||||||| ||| ||||||||| ||||||||||||||||| || |||||    
T  18524299 gagctttctaattttaggtgaatacataaatatttcaatttgtttttaatttct 18524246  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 49382504 - 49382568
Alignment:
Q  130 atgaatatttcaatttgtttctactttcta-tagggaattgatttaa-cctttttgtgtgaaact 192  Q
    |||||||||||||||||||| || ||| || | |||||||||||||| | |||||||||||||||    
T  49382504 atgaatatttcaatttgtttttaatttttatttgggaattgatttaatcttttttgtgtgaaact 49382568  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 47129807 - 47129873
Alignment:
Q  206 cacgatgtaagaatcatgaattttgagagtattatgtatgacaaataaaatttgaatggattatata 272  Q
    ||||||||||||||||||| |||||   | |||||||||||   || ||||||||||||||||||||    
T  47129807 cacgatgtaagaatcatgatttttgtatgaattatgtatgatttatgaaatttgaatggattatata 47129873  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 23282820 - 23282782
Alignment:
Q  192 tcataaatttaacgcacgatgtaagaatcatgaattttg 230  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  23282820 tcataaattgaacgcaccatgtaagaatcatgaattttg 23282782  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 23282999 - 23282918
Alignment:
Q  113 taattatagatgaatacatgaatatttcaatttgtttctactttctat-agggaattgatttaa-cctttttgtgtgaaact 192  Q
    ||||| |||||||||| ||  |||||||||||| |||||| |||||||   ||||||||||||| | |||||||||||||||    
T  23282999 taattttagatgaatatatagatatttcaatttttttctaatttctatgtaggaattgatttaatcttttttgtgtgaaact 23282918  T

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