View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_11 (Length: 519)
Name: NF18336_high_11
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 2636412 - 2636921
Alignment:
| Q |
1 |
cgagcttatttaataaattcatattacgagaacactgattaacaagactcatataagaacgtaaccctaattccctttgtattgaccatactatctacgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | || |
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| T |
2636412 |
cgagcttatttaataaattcatattacgagaacactgattaacaagactcatataagaacgtaactctaattccctttgtatttaccatactatcaatgt |
2636511 |
T |
|
| Q |
101 |
atgcgccacacataacttttcacttgttattgcctcagagccttactacatctcttgtctctccaaattatcttcttcatcttccaggatctatgtgacc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2636512 |
atgcgctgcacataacttttcacttgttattgcctcagagccttactacatctcttgtctctccaaattatcttcttcatcttccaggatctacgtgacc |
2636611 |
T |
|
| Q |
201 |
caacatttatgcccccattcctagacaatcgtatctacaatggttccacttccagcaactcgtgtcctgtcgttttaaattttgaagatgtaaaaaggga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636612 |
caacatttatgcccccattcctagacaatcgtatccacaatggttccacttccagcaactcgtgtcctgtcgttttaaattttgaagatgtaaaaaggga |
2636711 |
T |
|
| Q |
301 |
aaactagtttgatatgtggaatcgatcaaagcgctggttttccagtttttgccgattttcaaccggtttcctggtctgctatctcgggtcatgtctctga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2636712 |
aaactagtttgatatgtggaatcgatcaaaccgccggttttccagtttttgccggttttcaaccggtttcctggtctgctatctcggatcatgtctctgt |
2636811 |
T |
|
| Q |
401 |
aagagcgtctcaacactctc-aaaaagggacatcttctgctgcatcataccttcagtccatgaaatccatttctgatgagttatcactcatcggacatcc |
499 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636812 |
aagagcgtctcaacactctcaaaaaagggacatcttctgctgcatcataccttcagtccatgaaatccatttctgatgagttatcactcatcggacatcc |
2636911 |
T |
|
| Q |
500 |
tcttgatgat |
509 |
Q |
| |
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|||||||||| |
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|
| T |
2636912 |
tcttgatgat |
2636921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 382 - 509
Target Start/End: Complemental strand, 19734298 - 19734170
Alignment:
| Q |
382 |
tctcgggtcatgtctctgaaagagcgtctcaacactctcaaaaa-gggacatcttctgctgcatcataccttcagtccatgaaatccatttctgatgagt |
480 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19734298 |
tctcggatcatgtctctgaaagagcgtctcaactctctcaaaaaagggacatcttctgctgcatcataccttcagtccatgaaatccatttctgatgagt |
19734199 |
T |
|
| Q |
481 |
tatcactcatcggacatcctcttgatgat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
19734198 |
tatcactcatcggacatcctcttgatgat |
19734170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 389 - 509
Target Start/End: Complemental strand, 40914943 - 40914822
Alignment:
| Q |
389 |
tcatgtctctgaaagagcgtctcaacactctcaaaaa-gggacatcttctgctgcatcataccttcagtccatgaaatccatttctgatgagttatcact |
487 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
40914943 |
tcatgtctctgaaagagcgtctcaactctctaaaaaaagggacatcttctgctgcatcataccttcagtccatgaaatccatttttgatgagttatcgct |
40914844 |
T |
|
| Q |
488 |
catcggacatcctcttgatgat |
509 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
40914843 |
catcggacatcctcttgatgat |
40914822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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