View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_13 (Length: 453)
Name: NF18336_high_13
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 33931235 - 33930792
Alignment:
| Q |
16 |
attttctctccatagaatccaagttactctatgattatttggtacctgtcttatcaatttcaatgttggaagaaaggatgatgatatcaatggtggggtt |
115 |
Q |
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| T |
33931235 |
attttctctccatagaatccaagttactctatgattatttggtacctgtcttatcaatttcaatgttggaagaaaggatgatgatatcaatggtggggtt |
33931136 |
T |
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| Q |
116 |
aaagactatgattgacaaatccttaaagtgatatttaaataaaatatcttcagcttatggtgacttaatactaaaattaattttgtatgacttttatgaa |
215 |
Q |
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| T |
33931135 |
aaagactatgattgacaaatccttaaagtgatatttaaataaaatatcttcagcttatggtgacttaatactaaaattaattttgtatgacttttatgaa |
33931036 |
T |
|
| Q |
216 |
agatataattaaagtcaaat-----------------atttttgattgatttacggtcgattcacatcaattaaatccctctcgttttcgggaaaaatga |
298 |
Q |
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| T |
33931035 |
agatataattaaagttaaatatttttaaaaatttaagatttttgattgatttacggtcgattcacatcaattaaatccctctagttttcgggaaaaatga |
33930936 |
T |
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| Q |
299 |
gttttgataatttgaagtttagttaaaatgtaagtaaagtcaaggcaaagattgtttcagtcggaatttgaatttggattgttctaaacgattcgttttt |
398 |
Q |
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| T |
33930935 |
attttgataatttgaagtttagtcaaaatgtaagtaaagtcaaggtaaagattgtttcagtcggaatttgaacttggattgttctaaacgattcg-tttt |
33930837 |
T |
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| Q |
399 |
tattaaagtttattaaacacttgaattcaaatcactaagcctatg |
443 |
Q |
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| T |
33930836 |
tattaaagtttattaaacacttgaattcaaatcactaaacctatg |
33930792 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 32109906 - 32109863
Alignment:
| Q |
197 |
tttgtatgacttttatgaaagatataattaaagtcaaatattttt |
241 |
Q |
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||||||||||||||||| | |||||||||||||| |||||||||| |
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| T |
32109906 |
tttgtatgacttttatgta-gatataattaaagttaaatattttt |
32109863 |
T |
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