View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_14 (Length: 451)
Name: NF18336_high_14
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 439
Target Start/End: Original strand, 53126815 - 53127248
Alignment:
| Q |
7 |
attgcatggttttagacaaacaaaaatagaatgtcaatcttataaaactaaaaagtgttacaaacatgattattcggcactacacaacaagcacaactta |
106 |
Q |
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| T |
53126815 |
attgcatggtattagacaaacaaaaatagaatgtcaatcttataaaactaaaaagtgttacaaacatgattattcggcactacacaacaagcacaactta |
53126914 |
T |
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| Q |
107 |
acataatgataatctgaatatttttatggtaaatttcaaaaaggaatgt-gttgaaacgtatttaccggcacatgttttttcttgagcaagcttgtaaat |
205 |
Q |
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| T |
53126915 |
acataatgataatctgaatatttttatggtaaatttcaaaaaggaatgttgttgaaacgtatttaccggcacatgttttttcttgagcaagcttgtaaat |
53127014 |
T |
|
| Q |
206 |
gaggagggcaactcctaatgcatgcacaaactcagcagctacgaagagattgtcgtggtcgtgaacgatcattctaagaaaaaccaaagctgcaatgccc |
305 |
Q |
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| T |
53127015 |
gaggagggcaactcctaatgcatgcacaaactcagcagctacgaagagattgtcgtggtcgtgaacgatcattctaagaaaaaccaaagctgcaatgccc |
53127114 |
T |
|
| Q |
306 |
gaaagaatcgccagaaaaaccttcatcttcggcggttgccggcgaagccatttggtcacggcgtggatcgggcttttcgtagccttcattgttttcttcc |
405 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53127115 |
gaaagaatcgccagaaacaacttcatcttcggcggttgccggcgaagccatttggtcacggcgtggatcgggcttttcgtagccttcattgttttcttcc |
53127214 |
T |
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| Q |
406 |
ttgtttgtttgtgaatctattctcttctcttctg |
439 |
Q |
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| T |
53127215 |
ttgtttgtttgtgaatctattctcttctcttctg |
53127248 |
T |
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