View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_16 (Length: 420)
Name: NF18336_high_16
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 107164 - 107558
Alignment:
| Q |
16 |
aagttggccatgtttgccgtagggatatatagcaacattcaagtataggtagaatatttacataattcattttaataatatattcttatttcctcctata |
115 |
Q |
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| T |
107164 |
aagttggccatgtttgccgtagggatatatagcaacattcaagcataggtagaatatttacataattcattttaataatatattcttatttcctcctata |
107263 |
T |
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| Q |
116 |
aattcctgttttcatatttttaatgacattttaggagcgactgaatagatgttctgaatcattnnnnnnnntatatgtctaagttatcctaaaagaattt |
215 |
Q |
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| T |
107264 |
aattcctgttttcatatttttaatgacattttaggagcgactgaatagatgttctgaatcattaaaaaaa--atatgtctaagttatcctaaaagaattc |
107361 |
T |
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| Q |
216 |
tgtatttcccgctgaaaactc---tttttaagtaaaaagccatttttgaataaaaaagaaagtaaatagtcatttgnnnnnnnnaatgaaaaagattatt |
312 |
Q |
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| T |
107362 |
tgtatttcccgctgaaaactcatttttttaagtaaaaagccatttttgaataaaaaagaaagtaaatagtcatttgttttttttaatgaaaaagattatt |
107461 |
T |
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| Q |
313 |
tgattcttatattaggatgaagtaaaatgaaagttgacttaattgataagaagttgactcatcaataagttggattcaacttctgcacataagtacc |
409 |
Q |
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| T |
107462 |
tgattcttatattaggatgtagtaaaatgaaagttgacttaattgataagaagttgactcatcaataagttggattcaacttctgcacataagtacc |
107558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 167439 - 167491
Alignment:
| Q |
96 |
tattcttatttcctcctataaattcctgttttcatatttttaatgacatttta |
148 |
Q |
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| T |
167439 |
tatttttatttccttctataaattcccgttttcatatttttaatgacatttta |
167491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 41624719 - 41624756
Alignment:
| Q |
338 |
aatgaaagttgacttaattgataagaagttgactcatc |
375 |
Q |
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| T |
41624719 |
aatgaaggttgactcaattgataagaagttgactcatc |
41624756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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