View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18336_high_17 (Length: 405)
Name: NF18336_high_17
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 51786431 - 51786212
Alignment:
| Q |
10 |
gagcagagacatgaagtggaccctttgctgggcctaaagttcggtccgaaaatgagactatttacttagcgggagatgacacctaaagtgattttatggt |
109 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51786431 |
gagcagaggcatgaagtggaccctttgttggacctaaaattcggttcgaaaatgagactacttacttagcaggagatgacacctaaagtgattttatggt |
51786332 |
T |
|
| Q |
110 |
attaacaatgaacatctcatcaatgcatgtatacttannnnnnngaatggttgctctttaatttggcccatattttccctttattcttaaaaataacatt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51786331 |
attaacaatgaacatctcatcaatgcatgtatacttatttttttgaatggtttctctttaatttggcccatattttccctttattcttaaaaataacatt |
51786232 |
T |
|
| Q |
210 |
tgaaagttaatttctgaaac |
229 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
51786231 |
tgagagttaatttctgaaac |
51786212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 265 - 387
Target Start/End: Complemental strand, 51786173 - 51786051
Alignment:
| Q |
265 |
cgttcaagagttatctctcccaaacaattaacacattttttgaggccaaaagagcaacgtttatttctctgactatcctaaaaaactattgacaagatta |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51786173 |
cgttcaagagttatctctcccaaacaattaacacattttttgaggccaaaagagcaacgtttatttctctgactatcctaaaaaactattgacaagatta |
51786074 |
T |
|
| Q |
365 |
aaatggacatgaacaacaatatt |
387 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
51786073 |
aaatggacatgaacaacaatatt |
51786051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University