View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18336_high_18 (Length: 364)
Name: NF18336_high_18
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 42638946 - 42639288
Alignment:
| Q |
9 |
tatgatatcatttattcaaatatatataccaagtat----tgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactac |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42638946 |
tatgatatcatttattcaaatatatatactaagtatatattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactac |
42639045 |
T |
|
| Q |
105 |
aatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaacc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639046 |
aatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaacc |
42639145 |
T |
|
| Q |
205 |
ttggttgatgacaccgtgcacattattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatcca |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639146 |
ttggttgatgacaccgtgcacgttattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatcca |
42639245 |
T |
|
| Q |
305 |
tcaaaaccattgtctcttccagctggtccatagttgtagttcc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639246 |
tcaaaaccattgtctcttccagctggtccatagttgtagttcc |
42639288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 42 - 333
Target Start/End: Original strand, 42633903 - 42634197
Alignment:
| Q |
42 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
141 |
Q |
| |
|
|||||||||| | |||||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
42633903 |
tattgtatggattgctagcttagcagttaagcttatcaccaggagcaacacccagttgactacaatattgagtgtagtaatcaacacgagccttaactgt |
42634002 |
T |
|
| Q |
142 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaacc---ttggttgatgacaccgtgcacattattcatccaa |
238 |
Q |
| |
|
| |||| | |||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||||| |||||||| |||||||||| |
|
|
| T |
42634003 |
gttggggtcaacaccgtcacattcaagtcgaccattaatggctctaaccgttgcaccaaagccttgttggttcatgacattgtgcacatgattcatccaa |
42634102 |
T |
|
| Q |
239 |
taccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtcc |
333 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
42634103 |
taccataatgctgtcttgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagctggtcc |
42634197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 42628384 - 42628551
Alignment:
| Q |
42 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
141 |
Q |
| |
|
|||||||||| | |||||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42628384 |
tattgtatggattgctagcttagaaagtaagcttatcaccaggagcaacacccaattgactacaatattgagtgtagcaaccaacacgagtctgaactgt |
42628483 |
T |
|
| Q |
142 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggt |
209 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
42628484 |
agttggcttagcaccatcacattcaagtcgaccattaatggctctagtggttgcaccaaagccttggt |
42628551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
268 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University