View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18336_high_19 (Length: 353)
Name: NF18336_high_19
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_19 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 4390224 - 4389907
Alignment:
| Q |
13 |
atcatcatagagttgaatggaagaaaacagggtgttgtgtaatggttgatggatggactgataagaagaagaggagtatattgaacttgttggtgaatag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4390224 |
atcatcatagagttgaatggaagaaaacagggtgttgtgtaatggttgatggatggactgataagaagaagaggagtatattgaacttgttagtgaatag |
4390125 |
T |
|
| Q |
113 |
tttgaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggtt |
212 |
Q |
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| ||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4390124 |
tgtgaatgggatgttctttttgaagtcggttgatgcgtccgatatgttggaatcgtctgagaaattgtttaagatgatggatgatgttgttgaagaggtt |
4390025 |
T |
|
| Q |
213 |
ggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacac |
312 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4390024 |
ggtgaagaaaatgttgttcaagttgtgacggataatacggcatatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacac |
4389925 |
T |
|
| Q |
313 |
cttgtgcgacacactgcatt |
332 |
Q |
| |
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||||| ||||||||||||| |
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| T |
4389924 |
cttgt--gacacactgcatt |
4389907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 4377541 - 4377222
Alignment:
| Q |
13 |
atcatcatagagttgaatggaagaaaacagggtgttgtgtaatggttgatggatggactgataagaagaagaggagtatattgaacttgttggtgaatag |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4377541 |
atcatcatagagttcaatggaagaaaacagggtgttgtataatggttgatggatggactgataagaagaagaggagtatattgaatttgttggtgaatag |
4377442 |
T |
|
| Q |
113 |
tttgaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggtt |
212 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377441 |
tttgaatgggacattctttttgaagtcggttgatgcgtcagatatgatggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggtt |
4377342 |
T |
|
| Q |
213 |
ggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacac |
312 |
Q |
| |
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|| |||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377341 |
ggggaagaaaatgttgttcaagttgtaacggataatacgacttatttcaaagctgctggtgagatgttgatggagaagaggactaggttgtattggacac |
4377242 |
T |
|
| Q |
313 |
cttgtgcgacacactgcatt |
332 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
4377241 |
cttgtgcgacacactgcatt |
4377222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 4385111 - 4384795
Alignment:
| Q |
16 |
atcatagagttgaatggaagaaaacagggtgttgtgtaatggttgatggatggactgataagaagaagaggagtatattgaacttgttggtgaatagttt |
115 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
4385111 |
atcatagagttcaatggaagaaaacggggtgttgtgtaatggttgatggatggactgacaagaagaagaggagtatattgaacttgttggtgaatagtgt |
4385012 |
T |
|
| Q |
116 |
gaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggt |
215 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4385011 |
gaatgggacgttctttttaaagtcggttgatgcgtcagatatgttggaatcgtctgagaaattgtttaagatgatggatgatgttgttgaagaggttggg |
4384912 |
T |
|
| Q |
216 |
gaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacacctt |
315 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4384911 |
gaagaaaatgttgttcaagttgtcacggataatacggcttatttcaaagctgctggtgagatgttgatggagaagaggactaggttgtattggacacctt |
4384812 |
T |
|
| Q |
316 |
gtgcgacacactgcatt |
332 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
4384811 |
gtgcgacacactgcatt |
4384795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 126 - 326
Target Start/End: Original strand, 4414444 - 4414643
Alignment:
| Q |
126 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
225 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| ||| | ||| | ||||||||||||||||| |||| ||||||||||| |||||||||| |
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|
| T |
4414444 |
ttctttttgaagtccgttgatgcgtcgaatatgttggaatcacctaacaaactctttaagatgatggatgaaattgtagaagaggttgg-gaagaaaatg |
4414542 |
T |
|
| Q |
226 |
ttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacaca |
325 |
Q |
| |
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|| | ||| ||||||| || ||||| | || | || || |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
4414543 |
ttgtccaaattgtgacagacaatacaacctactacaaagttgctggtgagatgtagatggtgaaaaggactaggttgtattggacaccttgtgcaacaca |
4414642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 126 - 332
Target Start/End: Complemental strand, 4360476 - 4360270
Alignment:
| Q |
126 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
225 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
4360476 |
ttctttttgaagactattgatgcgtctgatatgttggaatcgtctgagaaactctttaaaatgatggatgacgttgttgaagaggttggggaagaaaatg |
4360377 |
T |
|
| Q |
226 |
ttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacaca |
325 |
Q |
| |
|
|| | || ||||| ||||| |||| | || | |||||| | || ||||||||||| ||| ||||||||| |||||||||||||||| || ||||| |
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|
| T |
4360376 |
ttgtccacgttgtaacggaatatacaccatactatgtagctgccgctgggatgttgatggcgaaaaggactaggctgtattggacaccttgcgcaacaca |
4360277 |
T |
|
| Q |
326 |
ctgcatt |
332 |
Q |
| |
|
|||||| |
|
|
| T |
4360276 |
ttgcatt |
4360270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 4365872 - 4365773
Alignment:
| Q |
126 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
225 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
4365872 |
ttctttttgaagtctattgatgcgtctgatatgttggaatcgcctgagaaactctttaagatgatggatgacgttgttgaagaggttggggaagaaaatg |
4365773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 126 - 332
Target Start/End: Complemental strand, 4370272 - 4370066
Alignment:
| Q |
126 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
225 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||||||||||| ||| | ||| ||| |||| | |||||||||||||||| |||||||||| |
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|
| T |
4370272 |
ttctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaaatg |
4370173 |
T |
|
| Q |
226 |
ttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacaca |
325 |
Q |
| |
|
|| | ||| |||||||||| ||||| | | | |||||||| ||||||||||||||||||||| || |||||| |||||||||| |||||||| ||| | |
|
|
| T |
4370172 |
ttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatggagaaaagaactaggctgtattggaccccttgtgcaacaaa |
4370073 |
T |
|
| Q |
326 |
ctgcatt |
332 |
Q |
| |
|
|||||| |
|
|
| T |
4370072 |
ttgcatt |
4370066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 324
Target Start/End: Original strand, 5725483 - 5725627
Alignment:
| Q |
180 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgt |
279 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| |||||||||||| | ||| |||||||||| | | | | || | | ||||||||||||| |
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|
| T |
5725483 |
tttaagatgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatactatgaaaaggctggtgagatgt |
5725582 |
T |
|
| Q |
280 |
tgatggagaagaggactaggttgtattggacaccttgtgcgacac |
324 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
5725583 |
tgatgaagaaaaggactaggttgtattggacaccttgtgcaacac |
5725627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 15658701 - 15658840
Alignment:
| Q |
180 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgt |
279 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||||||||| | || || || ||||| ||| | || ||| | || ||||||||| ||| |
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|
| T |
15658701 |
tttaagatgattgatgatgttgttgaagagattggagaagaaaatgttgtccaggtagttacggacaatgcagcaaattataaggcagctggtgagttgt |
15658800 |
T |
|
| Q |
280 |
tgatggagaagaggactaggttgtattggacaccttgtgc |
319 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
15658801 |
tgatggagaagaggccacatttgtattggacaccatgtgc |
15658840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 245861 - 245814
Alignment:
| Q |
180 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgtt |
227 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
245861 |
tttaagatgattgatgatgttgttgaagagattggagaagaaaatgtt |
245814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 244638 - 244685
Alignment:
| Q |
180 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgtt |
227 |
Q |
| |
|
||||||||||| ||||||||||||||| || |||| |||||||||||| |
|
|
| T |
244638 |
tttaagatgattgatgatgttgttgaaaagattggagaagaaaatgtt |
244685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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