View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_22 (Length: 340)
Name: NF18336_high_22
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 40363456 - 40363763
Alignment:
| Q |
16 |
atgtcttattgtttaccatcataaaatcaaacattaatcttgaattaggagtactagtgcttccatattctaaaccacttcttttccttacagataaccg |
115 |
Q |
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| T |
40363456 |
atgtcttgttgtttaccatcataaaatcaaacattaatcttgaattaggagtactagtgcttccatattctaatccacttcttttccttacagataaccg |
40363555 |
T |
|
| Q |
116 |
acacagaacccattctcctatctcatttccatagttctgccaacccnnnnnnnnttatattatattaaataaatatatttacacgactattttgaaacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |
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| T |
40363556 |
acacagaacccattctcctatctcatttccatagttctgccaacccaaaaaaaattatattatattaaataaatatatttacacgactattttgcaatca |
40363655 |
T |
|
| Q |
216 |
tctccaaaataatttgaactccgttgcttaaagttataatttcaaactcttacaacgcgtaagtaattacctgagctgagttgttagtagtttctacatt |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40363656 |
tctctgaaataatttgaactccgttgcttaaagttataatttcaaactcttacaacgcgtaagtaattacctgagctgagttgttagtagtttctacatt |
40363755 |
T |
|
| Q |
316 |
gatgaggc |
323 |
Q |
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|||||||| |
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| T |
40363756 |
gatgaggc |
40363763 |
T |
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