View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_23 (Length: 312)
Name: NF18336_high_23
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 38886526 - 38886808
Alignment:
| Q |
12 |
tcatcagaaacaaaacagactaaacctgaggatgaagaagatggtgagaaaccagaagggattaaagcaaatgaaatacggtaccatgtcatttcattag |
111 |
Q |
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| T |
38886526 |
tcatcagaaacaaaacagactaaacctgaggatgaagaagatggtgagaaaccagaagggattaaagcaaatgaaatacggtaccacgtcatttcattag |
38886625 |
T |
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| Q |
112 |
gatcaaagaggtagccttcaaaggaagtactatcagtgatgttgttactgtttttgtagatgtgagtttttgatctggttttgtgtttgaagaagatgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886626 |
gatcaaagaggtagccttcaaaggaagtactatcagtgatgttgttactgtttttgtagatgtgagtttttgatctggttttgtgtttgaagaagatgaa |
38886725 |
T |
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| Q |
212 |
ccagtggaaacgaggtgaaacttgaaggtataattcaaggaaagagttggaaaagagaagagagtagaatctcttgcagacag |
294 |
Q |
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| T |
38886726 |
ccagtggaaacgaggtgaaacttgaaggtataattcaaggaaagagttggaaaagagaagagagtagaatctcttgcagacag |
38886808 |
T |
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