View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_24 (Length: 310)
Name: NF18336_high_24
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 24305881 - 24305601
Alignment:
| Q |
13 |
aatattaagttgtttatattataagacaattagaactatctttacttcatatcaaggttccttgttaaacaccttgtttagatcctaattaaactagtta |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
24305881 |
aatattaagttctttatattataagacaattagaactatctttacttcatatcaaggttccttgttaaacaccttgtttagatcctaattaa-caagtta |
24305783 |
T |
|
| Q |
113 |
aaatctttaggtcaatcacatattcatcannnnnnnn-gttacaactgaactcttctaagacttactttactctattttgtaatcgttacaactgcccaa |
211 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24305782 |
aaatctttaggtcaatcacatattcatcatttttttttgttacaactgaactcttctaagacttactttactctattttgtaatcgttacaactgcccaa |
24305683 |
T |
|
| Q |
212 |
cccaaatgatagtttaaatttgatgactttgcttaaggacatgtctctctttttcatttatagtagattttcatcaagtatc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24305682 |
cccaaatgatagtttaaatttgatgactttgcttaaggacatgtctctttttttcatttatagtagattttcatcaagtatc |
24305601 |
T |
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