View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_27 (Length: 292)
Name: NF18336_high_27
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 3274686 - 3274951
Alignment:
| Q |
13 |
aaaatatattgatatttattttataatttcaaatatcaaatttaatttgaaattggacctttaaacttgataattaggcacagacaatacatgttctatt |
112 |
Q |
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| T |
3274686 |
aaaatatattgatatttattttataatttcaaatatcaaatttaatttgaaattggacctttaaacttgataattaggcacagacaatacatgttctatt |
3274785 |
T |
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| Q |
113 |
tttattgttagtataatatatgtataaatgtttatgtaaatattaccctgctccaccagtcttcaccgttaccatttatcactcctgatccattaagggt |
212 |
Q |
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| T |
3274786 |
tttattgttagtacaatatatgtataaatgtttatgtacatattaccttgctccaccagtcttcaccgttaccatttatcactcctgatccatcaagaat |
3274885 |
T |
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| Q |
213 |
caatccatgtattttaaagaaatgaatccaatataatgaacactctcttccccaatcacttctttt |
278 |
Q |
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| T |
3274886 |
caatccatgtatgttaaagaaatgaatccaatataatgaacactctcttccccaatcacttctttt |
3274951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 278
Target Start/End: Original strand, 3279800 - 3279944
Alignment:
| Q |
135 |
tataaatgtttatgtaaata-ttaccctgctccaccagtcttcaccgttaccatttatcactcctgatccattaagggtcaatccatgtattttaaagaa |
233 |
Q |
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||||||||||||||| | || ||||||| ||| |||| |||||||||||||||| |||||||||||||||| ||| ||||||||| ||| |||||||| |
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| T |
3279800 |
tataaatgtttatgtgattagttaccctactctcccagccttcaccgttaccattgatcactcctgatccatcaagtgtcaatccagatatgttaaagaa |
3279899 |
T |
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| Q |
234 |
atgaatccaatataatgaacactctcttccccaatcacttctttt |
278 |
Q |
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| T |
3279900 |
atgaagccacattagcgaacactctcttccccaatcacttctttt |
3279944 |
T |
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