View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18336_high_3 (Length: 797)
Name: NF18336_high_3
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 715; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 18 - 788
Target Start/End: Original strand, 31505187 - 31505957
Alignment:
| Q |
18 |
tttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggttcgatagtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505187 |
tttcttatattatgtttactgtaatctctattggacttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggttcgatagtg |
31505286 |
T |
|
| Q |
118 |
cttttattnnnnnnnntatatatgataagcagtgctaatattaggtccactcctttttatttgttaattgtggttgtcaatccatatcaacatgttcagt |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505287 |
cttttattaaaaaaaatatatatgataagcagtgctaatattaggtccactcctttttatttgttaattgtggttgtcaatccatatcaacatgttcagt |
31505386 |
T |
|
| Q |
218 |
tgttccttaaaagccaatttgccactggactatttggttgtgttaggaaaagtaggtacatatgtacggatatggttcttcaaagttattgttaactgct |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505387 |
tgttccttaaaggccaatttgccactggactatttggttgtgttaggaaaagtaggtacatatgtacggatatggttcttcaaagttattgttaactgct |
31505486 |
T |
|
| Q |
318 |
gtatcatggatttacagtcggaaagttttattcctttgtttgtaacaactatgacaataatatttataacctcaaatatctctttatgcagacaaagctg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505487 |
gtatcatggatttacagtcggaaagttttattcctttgtttgtaacaactatgacaataatatttataacctcaaatatctctttatgcagacaaagctg |
31505586 |
T |
|
| Q |
418 |
attcaatgattttattctgacttttttacaagatagtttgtattatgtacttcaatctgctatggttaagctaacaaaagttctgtttgtaggttgcaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505587 |
attcaatgattttattctgacttttttacaagatagtttgtattatgtacttcaatctgctatggttaagctaacaaaagttctgtttgtaggttgcaaa |
31505686 |
T |
|
| Q |
518 |
aagtggttctgttaaggttgagaagcttatgaatgttgaacgatattcccatgtgatgcacatcagctcaacggtgagaacattcccttgctatctagtg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
31505687 |
aagtggttctgttaaggttgagaagcttatgaatgttgaacgatattcccatgtgatgcacatcagctcaacggtgagaacatttccttgttacctagtg |
31505786 |
T |
|
| Q |
618 |
ttaattgatgctttaaactattctattgtagtctgttatgcaaaaggcaactatgctggttacatccttctagaaaaaccaattttcatttgattttccc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505787 |
ttaattgatgctttaaactattctattgtagtctgttatgcaaaaggcaactatgctggttacatccttctagaaaaaccaattttcatttgattttccc |
31505886 |
T |
|
| Q |
718 |
tttgccggttgaattaatacacgtgattcttggtaaaatcagatggtaacattgcagatgtctgtgctcct |
788 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31505887 |
tttgtcggttgaattgatacacgtgattcttggtaaaatcagatggtaacattgcagatgtctgtgttcct |
31505957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 446 - 788
Target Start/End: Complemental strand, 27608642 - 27608293
Alignment:
| Q |
446 |
caagatagtttgtattatgtacttcaatctgctatggttaagctaacaaaagttctgtttgtaggttgcaaaaagtggttctgttaaggttgagaagctt |
545 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27608642 |
caagatagttcatattctgtacttcaatctgctatggttatgctaacaaaagttctgtttgcaggttgcaaaaagtggttctgttaaggttgagaagctt |
27608543 |
T |
|
| Q |
546 |
atgaatgttgaacgatattcccatgtgatgcacatcagctcaacggtgagaacattcccttgctatctagtgttaattgatgctttaaactattctattg |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27608542 |
atgaatgttgaacgatattcccatgtgatgcacatcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattg |
27608443 |
T |
|
| Q |
646 |
tagtct--gttatgcaaaaggcaacta---tgctggttacatccttcta-gaaaaaccaattttcatttgattttccctttgccggttgaattaatacac |
739 |
Q |
| |
|
|||| | |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27608442 |
tagttttatttatgcaaaaggaaactatgctgctggttacatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacat |
27608343 |
T |
|
| Q |
740 |
gtgattctt-ggtaaaatcagatggtaacattgcagatgtctgtgctcct |
788 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27608342 |
gtaattcttcaaaaaaatcagatggtaacattgcagatgtctgtgttcct |
27608293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 446 - 788
Target Start/End: Complemental strand, 34497094 - 34496749
Alignment:
| Q |
446 |
caagatagtttgtattatgtacttcaatctgctatggttaagctaacaaaagttctgtttgtaggttgcaaaaagtggttctgttaaggttgagaagctt |
545 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34497094 |
caagatagttcatattctgtacttcaatctgctatggttatgctaacaaaagttctgtttgcaggttgcaaaaagtggttctgttaaggttgagaagctt |
34496995 |
T |
|
| Q |
546 |
atgaatgttgaacgatattcccatgtgatgcacatcagctcaacggtgagaacattcccttgctatctagtgttaattgatgctttaaactattctattg |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34496994 |
atgaatgttgaacgatattcccatgtgatgcacatcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattg |
34496895 |
T |
|
| Q |
646 |
tag-tctgttatgcaaaaggcaactatgctggttacatccttcta-gaaaaaccaattttcatttgattttccctttgccggttgaattaatacacgtga |
743 |
Q |
| |
|
||| | | |||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||| || | |
|
|
| T |
34496894 |
tagtttttttatgcaaaaggaaactatgttggttacatccttctaggaaaaactaattttcattggattttccctttgctggttgaattaatacatgtaa |
34496795 |
T |
|
| Q |
744 |
ttctt-ggtaaaatcagatggtaacattgcagatgtctgtgctcct |
788 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
34496794 |
ttcttcaaaaaaatccaatggtaacattgcagatgtctgtgttcct |
34496749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 27609086 - 27608995
Alignment:
| Q |
18 |
tttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27609086 |
tttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggtt |
27608995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 34497555 - 34497464
Alignment:
| Q |
18 |
tttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34497555 |
tttcttatattatgtttactgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggtt |
34497464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 34497149 - 34497092
Alignment:
| Q |
140 |
tgataagcagtgctaatattaggtccactcctttttatttgttaattgtggttgtcaa |
197 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34497149 |
tgataagcagtgctaacattaggtccacttctttttatttgttaattgtggttttcaa |
34497092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 27608680 - 27608640
Alignment:
| Q |
157 |
attaggtccactcctttttatttgttaattgtggttgtcaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27608680 |
attaggtccactcctttttatttgttaattgtggttttcaa |
27608640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 51683802 - 51683738
Alignment:
| Q |
522 |
ggttctgttaaggttgagaagcttatgaatgttgaacgatattcccatgtgatgcacatcagctc |
586 |
Q |
| |
|
||||||||| | ||||| || ||||||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
51683802 |
ggttctgttcaagttgaaaaacttatgaatattgagcgatattcccatgttatgcacatcagctc |
51683738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 21898886 - 21898945
Alignment:
| Q |
317 |
tgtatcatggatttacagtcggaaagttttattcctttgtttgtaacaactatgacaata |
376 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
21898886 |
tgtatcatggatttgcagttattaagtattattcctttctttgtaacaactatgacaata |
21898945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University