View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_high_33 (Length: 251)
Name: NF18336_high_33
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 47198696 - 47198546
Alignment:
| Q |
89 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
188 |
Q |
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| T |
47198696 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
47198597 |
T |
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| Q |
189 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggacccca |
239 |
Q |
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| T |
47198596 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggacccca |
47198546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 47186141 - 47186007
Alignment:
| Q |
105 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
204 |
Q |
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| T |
47186141 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47186042 |
T |
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| Q |
205 |
gtctcactaggaattaaccaaccaagtggacccca |
239 |
Q |
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| T |
47186041 |
gtctcactaggaattaaccaaccaagtggacccca |
47186007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 748538 - 748656
Alignment:
| Q |
121 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
220 |
Q |
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| T |
748538 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
748637 |
T |
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| Q |
221 |
accaaccaagtggacccca |
239 |
Q |
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| T |
748638 |
gccaaccgagaggacccca |
748656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 1356896 - 1356823
Alignment:
| Q |
172 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccaccacca |
245 |
Q |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgacca |
1356823 |
T |
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