View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_high_37 (Length: 235)

Name: NF18336_high_37
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_high_37
NF18336_high_37
[»] chr8 (5 HSPs)
chr8 (108-211)||(8690698-8690801)
chr8 (129-211)||(8704991-8705073)
chr8 (16-61)||(8690606-8690651)
chr8 (130-185)||(8722069-8722124)
chr8 (130-166)||(8738501-8738537)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 8690698 - 8690801
Alignment:
Q  108 tcatttcctcataactatgacgttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcnnnnnnnngttacttggtaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  8690698 tcatttcctcataactatgacgttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatg 8690797  T
Q  208 attc 211  Q
    ||||    
T  8690798 attc 8690801  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 8704991 - 8705073
Alignment:
Q  129 gttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcnnnnnnnngttacttggtaatgattc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  8704991 gttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattc 8705073  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 8690606 - 8690651
Alignment:
Q  16 cataggtggtattagaaagtctctctttgtctcattttgttgctac 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8690606 cataggtggtattagaaagtctctctttgtctcattttgttgctac 8690651  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 8722069 - 8722124
Alignment:
Q  130 ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctc 185  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||| ||||||||    
T  8722069 ttcctgttggattcagattccatccaacagatcaagagcttgtaaactactatctc 8722124  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 8738501 - 8738537
Alignment:
Q  130 ttcctgttggattcagattccgaccaacagatgaaga 166  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  8738501 ttcctgtcggattcagattccgaccaacaaatgaaga 8738537  T

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