View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_high_38 (Length: 235)

Name: NF18336_high_38
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_high_38
NF18336_high_38
[»] chr4 (21 HSPs)
chr4 (1-235)||(53865248-53865483)
chr4 (1-44)||(2124339-2124383)
chr4 (1-44)||(36309622-36309666)
chr4 (1-36)||(9967685-9967720)
chr4 (1-43)||(33819687-33819730)
chr4 (1-45)||(21995664-21995709)
chr4 (1-45)||(41025055-41025100)
chr4 (1-36)||(1492675-1492711)
chr4 (1-36)||(6841824-6841860)
chr4 (1-36)||(8157294-8157330)
chr4 (1-36)||(8165765-8165801)
chr4 (1-48)||(10473653-10473701)
chr4 (1-36)||(17109923-17109959)
chr4 (1-36)||(25715646-25715682)
chr4 (1-36)||(25715732-25715768)
chr4 (1-36)||(31763113-31763149)
chr4 (1-36)||(36309419-36309455)
chr4 (1-36)||(36924244-36924280)
chr4 (1-44)||(37059706-37059750)
chr4 (1-36)||(54895407-54895443)
chr4 (1-36)||(54895588-54895624)
[»] chr8 (7 HSPs)
chr8 (1-43)||(32644043-32644085)
chr8 (1-43)||(18757333-18757376)
chr8 (1-36)||(1672936-1672972)
chr8 (1-36)||(15808888-15808924)
chr8 (1-36)||(17792897-17792933)
chr8 (1-36)||(27506709-27506745)
chr8 (1-36)||(35448615-35448651)
[»] chr5 (9 HSPs)
chr5 (1-43)||(7286959-7287001)
chr5 (1-49)||(3340580-3340629)
chr5 (1-45)||(39086511-39086556)
chr5 (1-45)||(11376586-11376630)
chr5 (1-36)||(11660987-11661023)
chr5 (1-36)||(23155528-23155564)
chr5 (1-44)||(35662238-35662282)
chr5 (1-36)||(39166345-39166381)
chr5 (1-36)||(39861785-39861821)
[»] chr3 (8 HSPs)
chr3 (1-49)||(50416569-50416618)
chr3 (4-45)||(12974006-12974048)
chr3 (1-45)||(36185910-36185955)
chr3 (1-36)||(8036803-8036839)
chr3 (1-44)||(36185721-36185765)
chr3 (1-48)||(47225853-47225901)
chr3 (1-36)||(47924371-47924407)
chr3 (1-36)||(50416483-50416519)
[»] chr1 (12 HSPs)
chr1 (1-44)||(42134138-42134182)
chr1 (1-44)||(45849103-45849147)
chr1 (1-42)||(9628604-9628646)
chr1 (1-36)||(9041056-9041092)
chr1 (1-36)||(10974636-10974672)
chr1 (1-36)||(14229175-14229211)
chr1 (5-48)||(17811292-17811336)
chr1 (1-36)||(17893075-17893111)
chr1 (1-36)||(17893278-17893314)
chr1 (1-44)||(18928960-18929004)
chr1 (1-44)||(29945421-29945465)
chr1 (1-36)||(33156995-33157031)
[»] chr6 (8 HSPs)
chr6 (6-45)||(26713184-26713223)
chr6 (1-46)||(10588958-10589004)
chr6 (1-45)||(10698571-10698616)
chr6 (1-44)||(19281278-19281322)
chr6 (1-36)||(19284374-19284410)
chr6 (1-36)||(21384994-21385030)
chr6 (1-36)||(22857491-22857527)
chr6 (1-36)||(22857682-22857718)
[»] chr2 (11 HSPs)
chr2 (1-36)||(31711704-31711739)
chr2 (1-45)||(31783787-31783832)
chr2 (1-44)||(16111710-16111754)
chr2 (1-36)||(19246665-19246701)
chr2 (1-36)||(20661399-20661435)
chr2 (1-36)||(24183602-24183638)
chr2 (1-44)||(30777290-30777334)
chr2 (1-36)||(34726607-34726643)
chr2 (1-44)||(37867360-37867404)
chr2 (1-36)||(42364495-42364531)
chr2 (1-44)||(42364698-42364742)
[»] scaffold0516 (1 HSPs)
scaffold0516 (1-36)||(1253-1289)
[»] scaffold0249 (2 HSPs)
scaffold0249 (1-36)||(23547-23583)
scaffold0249 (1-36)||(23740-23776)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-36)||(20125-20161)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-36)||(33619-33655)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-36)||(51908-51944)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-36)||(96002-96038)
[»] chr7 (5 HSPs)
chr7 (1-36)||(26945719-26945755)
chr7 (1-44)||(34227671-34227715)
chr7 (1-36)||(44426601-44426637)
chr7 (1-44)||(44426804-44426848)
chr7 (1-36)||(46004540-46004576)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 53865248 - 53865483
Alignment:
Q  1 tatgcagggtgcataaggatttc-ttatgcaccataagcgcgcccaaaatgcactacgctagggtaatttcttggtaactagtaatttcgcttgaacgca 99  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53865248 tatgcagggtgcataaggatttccttatgcaccataaccgcgcccaaaatgcactacgctagggtaatttcttggtaactagtaatttcgctcgaacgca 53865347  T
Q  100 atcactttttcttatttgaattttagatttctgcttgcacttgttttatccatggcaacagccctttctgcaattcgtattgttgtcgccggcgacaagg 199  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53865348 atcactttttcttatttgaattttagatttctgcttgcgcttgctttatccatggcaacagacctttctgcaattcgtattgttgtcgccggcgacaagg 53865447  T
Q  200 aaccggcaagtctagtctaatcactacttttgccac 235  Q
    ||||||||||||||||||||||||||||||||||||    
T  53865448 aaccggcaagtctagtctaatcactacttttgccac 53865483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2124383 - 2124339
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  2124383 tatgcagggtgcataaggatttccttatgcaccataaccgcgccc 2124339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36309622 - 36309666
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataagcgcgccc 44  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  36309622 tatgcagggtgcataaggattttcttatgcaccataaccgcgccc 36309666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9967720 - 9967685
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataa 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  9967720 tatgcagggtgcataaggattccttatgcaccataa 9967685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33819730 - 33819687
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcc 43  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  33819730 tatgcagggtgcataaggatttccttatgcaccataaccgcgcc 33819687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21995709 - 21995664
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 45  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  21995709 tatgcagggtgcataaggatttccttatgcaccataaccgcaccca 21995664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41025100 - 41025055
Alignment:
Q  1 tatgcagggtgcataaggatttc-ttatgcaccataagcgcgccca 45  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  41025100 tatgcagggtgcataaggatttcattatgtaccataaccgcgccca 41025055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1492711 - 1492675
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1492711 tatgcagggtgcataaggatttccttatgcaccataa 1492675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6841860 - 6841824
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6841860 tatgcagggtgcataaggatttccttatgcaccataa 6841824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8157294 - 8157330
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8157294 tatgcagggtgcataaggatttccttatgcaccataa 8157330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8165801 - 8165765
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8165801 tatgcagggtgcataaggatttccttatgcaccataa 8165765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10473653 - 10473701
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 48  Q
    |||||| ||||||||||||||| |||||||||||||| ||| |||||||    
T  10473653 tatgcacggtgcataaggatttccttatgcaccataaccgctcccaaaa 10473701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17109923 - 17109959
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17109923 tatgcagggtgcataaggatttccttatgcaccataa 17109959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25715682 - 25715646
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  25715682 tatgcagggtgcataaggatttccttatgcaccataa 25715646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25715732 - 25715768
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  25715732 tatgcagggtgcataaggattttcttatgcaccataa 25715768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31763113 - 31763149
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31763113 tatgcagggtgcataaggatttccttatgcaccataa 31763149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36309455 - 36309419
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  36309455 tatgcagggtgcataaggatttccttatgcaccataa 36309419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36924280 - 36924244
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  36924280 tatgcagggtgcataaggatttccttatgcaccataa 36924244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37059750 - 37059706
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||| ||||||||||||||| |||||||||||||| |||||||    
T  37059750 tatgcaaggtgcataaggatttccttatgcaccataaccgcgccc 37059706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 54895443 - 54895407
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  54895443 tatgcagggtgcataaggattttcttatgcaccataa 54895407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 54895588 - 54895624
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  54895588 tatgcagggtgcataaggatttccttatgcaccataa 54895624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32644085 - 32644043
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataagcgcgcc 43  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  32644085 tatgcagggtgcataaggattccttatgcaccataaccgcgcc 32644043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18757333 - 18757376
Alignment:
Q  1 tatgcagggtgcataaggatttc-ttatgcaccataagcgcgcc 43  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||    
T  18757333 tatgcagggtgcataaggatttctttatgcaccataaccgcgcc 18757376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1672936 - 1672972
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1672936 tatgcagggtgcataaggatttccttatgcaccataa 1672972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15808924 - 15808888
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  15808924 tatgcagggtgcataaggattttcttatgcaccataa 15808888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17792897 - 17792933
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17792897 tatgcagggtgcataaggatttccttatgcaccataa 17792933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27506745 - 27506709
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  27506745 tatgcagggtgcataaggatttccttatgcaccataa 27506709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35448615 - 35448651
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  35448615 tatgcagggtgcataaggatttccttatgcaccataa 35448651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7286959 - 7287001
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataagcgcgcc 43  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  7286959 tatgcagggtgcataaggattccttatgcaccataaccgcgcc 7287001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3340629 - 3340580
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaat 49  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  3340629 tatgcagggtgcataaggatttccttatgcaccataaccgcacccaaaat 3340580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39086556 - 39086511
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataagcgcgccca 45  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  39086556 tatgcagggtgcataaggattttcttatgcaccataaccgcaccca 39086511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11376586 - 11376630
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataagcgcgccca 45  Q
    ||||||| ||||||||||||| ||||||||||||||  |||||||    
T  11376586 tatgcagtgtgcataaggattccttatgcaccataactgcgccca 11376630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11660987 - 11661023
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11660987 tatgcagggtgcataaggatttccttatgcaccataa 11661023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23155564 - 23155528
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23155564 tatgcagggtgcataaggatttccttatgcaccataa 23155528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35662238 - 35662282
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||    
T  35662238 tatgcagggtgcataagtatttccttatgcaccataaccgcgccc 35662282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39166345 - 39166381
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39166345 tatgcagggtgcataaggattttcttatgcaccataa 39166381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39861785 - 39861821
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  39861785 tatgcagggtgcataaggatttccttatgcaccataa 39861821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50416569 - 50416618
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaat 49  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  50416569 tatgcagggtgcataaggatttccttatgcaccataaccgcacccaaaat 50416618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 12974048 - 12974006
Alignment:
Q  4 gcagggtgcataaggattt-cttatgcaccataagcgcgccca 45  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  12974048 gcagggtgcataaggatttccttatgcaccataaccgcgccca 12974006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36185910 - 36185955
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 45  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  36185910 tatgcagggtgcataaggatttccttatgcaccataaccgcaccca 36185955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8036839 - 8036803
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8036839 tatgcagggtgcataaggatttccttatgcaccataa 8036803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36185765 - 36185721
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||    
T  36185765 tatgcaggatgcataaggatttccttatgcaccataaccgcgccc 36185721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47225853 - 47225901
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 48  Q
    |||||||||| ||||||||||| ||||||||||||||  ||||||||||    
T  47225853 tatgcagggtacataaggatttccttatgcaccataactgcgcccaaaa 47225901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47924371 - 47924407
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  47924371 tatgcagggtgcataaggatttccttatgcaccataa 47924407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 50416519 - 50416483
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  50416519 tatgcagggtgcataaggatttccttatgcaccataa 50416483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42134138 - 42134182
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  42134138 tatgcagggtgcataaggatttccttatgcaccataaccgcgccc 42134182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45849147 - 45849103
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  45849147 tatgcagggtgcataaggatttccttatgcaccataatcgcgccc 45849103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9628604 - 9628646
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgc 42  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  9628604 tatgcagggtgcataaggatttccttatgcaccataaccgcgc 9628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9041056 - 9041092
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9041056 tatgcagggtgcataaggatttccttatgcaccataa 9041092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10974672 - 10974636
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10974672 tatgcagggtgcataaggatttccttatgcaccataa 10974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14229211 - 14229175
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  14229211 tatgcagggtgcataaggatttccttatgcaccataa 14229175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 17811292 - 17811336
Alignment:
Q  5 cagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 48  Q
    |||||||||||||||||| |||||||||||||| |||||| ||||    
T  17811292 cagggtgcataaggatttccttatgcaccataaccgcgccaaaaa 17811336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17893111 - 17893075
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17893111 tatgcagggtgcataaggatttccttatgcaccataa 17893075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17893278 - 17893314
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17893278 tatgcagggtgcataaggatttccttatgcaccataa 17893314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18928960 - 18929004
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  18928960 tatgcagggtgcataaagatttccttatgcaccataaccgcgccc 18929004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29945421 - 29945465
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||    
T  29945421 tatgcagagtgcataaggatttccttatgcaccataaccgcgccc 29945465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33157031 - 33156995
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  33157031 tatgcagggtgcataaggatttccttatgcaccataa 33156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 26713184 - 26713223
Alignment:
Q  6 agggtgcataaggatttcttatgcaccataagcgcgccca 45  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  26713184 agggtgcataaggatttcttatgcaccataaccgcaccca 26713223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10588958 - 10589004
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaa 46  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||    
T  10588958 tatgcagggtgcataaggatttccttatgcaccataaccgcacccaa 10589004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10698616 - 10698571
Alignment:
Q  1 tatgcagggtgcataaggatttc-ttatgcaccataagcgcgccca 45  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  10698616 tatgcagggtgcacaaggatttccttatgcaccataaccgcgccca 10698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19281322 - 19281278
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||    
T  19281322 tatgcagggtgcacaaggatttccttatgcaccataaccgcgccc 19281278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19284410 - 19284374
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19284410 tatgcagggtgcataaggatttccttatgcaccataa 19284374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21384994 - 21385030
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  21384994 tatgcagggtgcataaggatttccttatgcaccataa 21385030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22857527 - 22857491
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22857527 tatgcagggtgcataaggatttccttatgcaccataa 22857491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22857682 - 22857718
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22857682 tatgcagggtgcataaggattttcttatgcaccataa 22857718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31711704 - 31711739
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataa 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  31711704 tatgcagggtgcatgaggatttcttatgcaccataa 31711739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31783832 - 31783787
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 45  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  31783832 tatgcagggtgcataaggatttccttatgcaccataaccgcaccca 31783787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16111710 - 16111754
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  16111710 tatgcagggtgcataaagatttccttatgcaccataaccgcgccc 16111754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19246701 - 19246665
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19246701 tatgcagggtgcataaggatttccttatgcaccataa 19246665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 20661435 - 20661399
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  20661435 tatgcagggtgcataaggatttccttatgcaccataa 20661399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24183602 - 24183638
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  24183602 tatgcagggtgcataaggatttccttatgcaccataa 24183638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30777334 - 30777290
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataagcgcgccc 44  Q
    ||||||||||||||||||| ||| ||||||||||||| |||||||    
T  30777334 tatgcagggtgcataaggatttttttatgcaccataaccgcgccc 30777290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34726643 - 34726607
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34726643 tatgcagggtgcataaggatttccttatgcaccataa 34726607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37867360 - 37867404
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||    
T  37867360 tatgcagggtgcataaggatttccttatgcaccgtaaccgcgccc 37867404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42364531 - 42364495
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42364531 tatgcagggtgcataaggattttcttatgcaccataa 42364495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42364698 - 42364742
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||    
T  42364698 tatgcagggtgcataaggatttccttttgcaccataaccgcgccc 42364742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1253 - 1289
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1253 tatgcagggtgcataaggatttccttatgcaccataa 1289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23583 - 23547
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23583 tatgcagggtgcataaggatttccttatgcaccataa 23547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23740 - 23776
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23740 tatgcagggtgcataaggatttccttatgcaccataa 23776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20125 - 20161
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  20125 tatgcagggtgcataaggatttccttatgcaccataa 20161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33655 - 33619
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  33655 tatgcagggtgcataaggatttccttatgcaccataa 33619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 51944 - 51908
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  51944 tatgcagggtgcataaggatttccttatgcaccataa 51908  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 96038 - 96002
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  96038 tatgcagggtgcataaggattttcttatgcaccataa 96002  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26945719 - 26945755
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26945719 tatgcagggtgcataaggatttccttatgcaccataa 26945755  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34227715 - 34227671
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||    
T  34227715 tatgcaggttgcataaggatttccttatgcaccataaccgcgccc 34227671  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44426637 - 44426601
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44426637 tatgcagggtgcataaggatttccttatgcaccataa 44426601  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44426804 - 44426848
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  44426804 tatgcagggtgcataaagatttccttatgcaccataaccgcgccc 44426848  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 46004540 - 46004576
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  46004540 tatgcagggtgcataaggatttccttatgcaccataa 46004576  T

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