View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_high_41 (Length: 204)

Name: NF18336_high_41
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_high_41
NF18336_high_41
[»] chr7 (5 HSPs)
chr7 (13-187)||(5309703-5309877)
chr7 (13-187)||(5314520-5314694)
chr7 (13-187)||(5283878-5284052)
chr7 (13-187)||(5290075-5290249)
chr7 (13-187)||(5302066-5302240)
[»] chr5 (6 HSPs)
chr5 (22-187)||(1504369-1504534)
chr5 (20-187)||(1491605-1491772)
chr5 (21-187)||(1481715-1481881)
chr5 (18-187)||(1477604-1477773)
chr5 (18-169)||(1485469-1485622)
chr5 (21-179)||(1496823-1496981)
[»] chr1 (3 HSPs)
chr1 (19-187)||(44128183-44128351)
chr1 (19-187)||(44132388-44132556)
chr1 (19-187)||(44140810-44140978)
[»] chr2 (1 HSPs)
chr2 (19-187)||(24165436-24165604)
[»] chr3 (3 HSPs)
chr3 (23-136)||(37863716-37863829)
chr3 (23-79)||(37859726-37859782)
chr3 (23-79)||(39029635-39029691)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5309877 - 5309703
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||    
T  5309877 gagaagaatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttc 5309778  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  5309777 aacacaatttgctggatttgcagtaccaatggccaaaatagttgcaggaccttctgctctttgagcattacgaat 5309703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5314694 - 5314520
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||| |||||||||||||| || ||||| |||||||||||    
T  5314694 gagaagaatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttc 5314595  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5314594 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 5314520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5284052 - 5283878
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  5284052 gagaagaatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttc 5283953  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  5283952 aacacaatttgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttgagctttacgaat 5283878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 5290075 - 5290249
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5290075 gagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttc 5290174  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||||||| ||||||||    
T  5290175 aacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaat 5290249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5302240 - 5302066
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5302240 gagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttc 5302141  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||||||| ||||||||    
T  5302140 aacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaat 5302066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 1504534 - 1504369
Alignment:
Q  22 acttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatt 121  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || ||||| ||||||||||||||||||||    
T  1504534 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 1504435  T
Q  122 tgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  1504434 tggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgctctctgagccttgcgaat 1504369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 1491772 - 1491605
Alignment:
Q  20 atacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaa 119  Q
    ||||||||||||||| |||||||| ||||| || |||||||||||||| || |||||||||||||||||||| || ||||| |||||||||||||||||     
T  1491772 atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag 1491673  T
Q  120 tttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  1491672 tttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaat 1491605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 1481881 - 1481715
Alignment:
Q  21 tacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaat 120  Q
    |||||||||||||| |||||||| ||||| |||||   ||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||| |    
T  1481881 tacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagt 1481782  T
Q  121 ttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  1481781 ttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaat 1481715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 1477773 - 1477604
Alignment:
Q  18 gaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacac 117  Q
    ||||||||||||||||| |||||||| ||||| ||||||  |||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||||||    
T  1477773 gaatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacac 1477674  T
Q  118 aatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    | || |||||||||||||| ||||||||||  ||||| ||||| |||||||| || |||||||| |||||    
T  1477673 agttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccctctgagccttgcgaat 1477604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 1485622 - 1485469
Alignment:
Q  18 gaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaa--agtccggataagtgctttgttcaac 115  Q
    ||||||||||| |||||||||||||||||| | ||||  || ||||| || || |||| |||| | ||||| |  | || ||||| ||||||||||||||    
T  1485622 gaatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaac 1485523  T
Q  116 acaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgc 169  Q
    |||||||| |||||||||||| || |||||||| ||| ||||||| ||||||||    
T  1485522 acaatttggtggatttgcagttcctatggccaagatgattgcagggccttctgc 1485469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 1496981 - 1496823
Alignment:
Q  21 tacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaat 120  Q
    |||| ||| |||||||| ||||||| ||||| |||||| ||||| ||| ||||||||| | | || || |  || ||||| ||||||||||||| |||||    
T  1496981 tactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaat 1496882  T
Q  121 ttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagcc 179  Q
    ||| |||||||||||| ||||| || || || |||| ||| |||||||| |||||||||    
T  1496881 ttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttgagcc 1496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 44128351 - 44128183
Alignment:
Q  19 aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca 118  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||||||||    
T  44128351 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca 44128252  T
Q  119 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || |||||    
T  44128251 attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaat 44128183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 44132556 - 44132388
Alignment:
Q  19 aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca 118  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||||||||    
T  44132556 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca 44132457  T
Q  119 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || |||||    
T  44132456 attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaat 44132388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 44140978 - 44140810
Alignment:
Q  19 aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca 118  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||||||||    
T  44140978 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca 44140879  T
Q  119 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || |||||    
T  44140878 attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaat 44140810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 24165436 - 24165604
Alignment:
Q  19 aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca 118  Q
    |||||||||| ||||| |||||||| ||||| ||||   | ||||| || |||||||||| | ||||||| || || ||||| |||||||||||||||||    
T  24165436 aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca 24165535  T
Q  119 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
     |||| |||||||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  24165536 gtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttgagccttacgaat 24165604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 37863716 - 37863829
Alignment:
Q  23 cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaattt 122  Q
    ||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||    ||||||||||| ||||| || || || |||||||| |||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacacagttt 37863815  T
Q  123 gctggatttgcagt 136  Q
       |||||||||||    
T  37863816 tgaggatttgcagt 37863829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  23 cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgat 79  Q
    ||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
Q  23 cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgat 79  Q
    ||||||||||||||||||||| ||||| || || || ||||| ||||| ||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat 39029635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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